Model info
| Transcription factor | HOXD8 | ||||||||
| Model | HXD8_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | hhWTWTRCvnn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 278 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | HOX8{3.1.1.7} | ||||||||
| HGNC | 5139 | ||||||||
| EntrezGene | 3234 | ||||||||
| UniProt ID | HXD8_HUMAN | ||||||||
| UniProt AC | P13378 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 82.0 | 43.0 | 28.0 | 125.0 |
| 02 | 154.5 | 54.5 | 21.5 | 47.5 |
| 03 | 202.0 | 8.0 | 7.0 | 61.0 |
| 04 | 0.75 | 5.75 | 6.75 | 264.75 |
| 05 | 95.0 | 0.0 | 6.0 | 177.0 |
| 06 | 86.0 | 1.0 | 0.0 | 191.0 |
| 07 | 35.0 | 3.0 | 213.0 | 27.0 |
| 08 | 3.25 | 268.25 | 3.25 | 3.25 |
| 09 | 123.25 | 53.25 | 51.25 | 50.25 |
| 10 | 54.0 | 60.0 | 53.0 | 111.0 |
| 11 | 95.5 | 56.5 | 54.5 | 71.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.162 | -0.468 | -0.88 | 0.578 |
| 02 | 0.788 | -0.238 | -1.13 | -0.371 |
| 03 | 1.054 | -2.02 | -2.132 | -0.128 |
| 04 | -3.493 | -2.293 | -2.163 | 1.323 |
| 05 | 0.307 | -3.92 | -2.259 | 0.923 |
| 06 | 0.209 | -3.383 | -3.92 | 0.998 |
| 07 | -0.667 | -2.778 | 1.107 | -0.915 |
| 08 | -2.723 | 1.336 | -2.723 | -2.723 |
| 09 | 0.564 | -0.26 | -0.298 | -0.317 |
| 10 | -0.247 | -0.144 | -0.265 | 0.461 |
| 11 | 0.312 | -0.203 | -0.238 | 0.028 |