Transcription factor | HOXD3 | ||||||||
Model | HXD3_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HT-SELEX | ||||||||
Model length | 11 | ||||||||
Quality | D | ||||||||
Consensus | nRbTAATTRbd | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 601 | ||||||||
TF family | HOX-related factors{3.1.1} | ||||||||
TF subfamily | HOX3{3.1.1.3} | ||||||||
HGNC | 5137 | ||||||||
EntrezGene | 3232 | ||||||||
UniProt ID | HXD3_HUMAN | ||||||||
UniProt AC | P31249 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 123.75 | 147.75 | 188.75 | 136.75 |
02 | 146.5 | 40.5 | 343.5 | 66.5 |
03 | 29.75 | 126.75 | 168.75 | 271.75 |
04 | 0.75 | 0.75 | 3.75 | 591.75 |
05 | 548.0 | 0.0 | 49.0 | 0.0 |
06 | 542.0 | 0.0 | 55.0 | 0.0 |
07 | 0.0 | 0.0 | 62.0 | 535.0 |
08 | 5.0 | 5.0 | 119.0 | 468.0 |
09 | 431.0 | 12.0 | 135.0 | 19.0 |
10 | 100.5 | 107.5 | 274.5 | 114.5 |
11 | 99.25 | 92.25 | 258.25 | 147.25 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.185 | -0.01 | 0.233 | -0.087 |
02 | -0.018 | -1.276 | 0.828 | -0.795 |
03 | -1.571 | -0.162 | 0.122 | 0.594 |
04 | -4.163 | -4.163 | -3.34 | 1.37 |
05 | 1.293 | -4.548 | -1.092 | -4.548 |
06 | 1.282 | -4.548 | -0.98 | -4.548 |
07 | -4.548 | -4.548 | -0.864 | 1.269 |
08 | -3.13 | -3.13 | -0.224 | 1.136 |
09 | 1.054 | -2.406 | -0.099 | -1.991 |
10 | -0.39 | -0.324 | 0.604 | -0.262 |
11 | -0.403 | -0.475 | 0.544 | -0.013 |