Model info
| Transcription factor | HOXD12 | ||||||||
| Model | HXD12_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | nnKTTTAnbdn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 8291 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | HOX9-13{3.1.1.8} | ||||||||
| HGNC | 5135 | ||||||||
| EntrezGene | 3238 | ||||||||
| UniProt ID | HXD12_HUMAN | ||||||||
| UniProt AC | P35452 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2370.35 | 1151.822 | 1542.92 | 1657.387 |
| 02 | 2364.211 | 908.775 | 1575.298 | 1874.196 |
| 03 | 1174.568 | 318.947 | 1182.051 | 4046.913 |
| 04 | 125.25 | 66.382 | 697.634 | 5833.214 |
| 05 | 0.0 | 0.0 | 299.384 | 6423.095 |
| 06 | 0.0 | 0.63 | 272.827 | 6449.022 |
| 07 | 6722.48 | 0.0 | 0.0 | 0.0 |
| 08 | 1618.317 | 1795.294 | 890.708 | 2418.16 |
| 09 | 953.269 | 1074.696 | 2228.089 | 2466.425 |
| 10 | 2731.014 | 910.028 | 1878.706 | 1202.732 |
| 11 | 1313.222 | 2324.314 | 1649.137 | 1435.807 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.343 | -0.377 | -0.085 | -0.014 |
| 02 | 0.341 | -0.614 | -0.065 | 0.109 |
| 03 | -0.358 | -1.656 | -0.351 | 0.878 |
| 04 | -2.58 | -3.2 | -0.877 | 1.243 |
| 05 | -6.638 | -6.638 | -1.719 | 1.34 |
| 06 | -6.638 | -6.387 | -1.811 | 1.344 |
| 07 | 1.385 | -6.638 | -6.638 | -6.638 |
| 08 | -0.038 | 0.066 | -0.634 | 0.363 |
| 09 | -0.566 | -0.446 | 0.282 | 0.383 |
| 10 | 0.485 | -0.612 | 0.111 | -0.334 |
| 11 | -0.246 | 0.324 | -0.019 | -0.157 |