Model info
| Transcription factor | HOXD11 | ||||||||
| Model | HXD11_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | dhTTTATKdnn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 124 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | HOX9-13{3.1.1.8} | ||||||||
| HGNC | 5134 | ||||||||
| EntrezGene | 3237 | ||||||||
| UniProt ID | HXD11_HUMAN | ||||||||
| UniProt AC | P31277 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 40.75 | 16.75 | 23.75 | 42.75 |
| 02 | 32.5 | 14.5 | 12.5 | 64.5 |
| 03 | 4.0 | 3.0 | 13.0 | 104.0 |
| 04 | 0.0 | 2.0 | 12.0 | 110.0 |
| 05 | 30.0 | 0.0 | 0.0 | 94.0 |
| 06 | 103.0 | 0.0 | 18.0 | 3.0 |
| 07 | 1.0 | 35.0 | 0.0 | 88.0 |
| 08 | 3.25 | 3.25 | 58.25 | 59.25 |
| 09 | 56.5 | 12.5 | 34.5 | 20.5 |
| 10 | 29.75 | 45.75 | 20.75 | 27.75 |
| 11 | 32.25 | 28.25 | 21.25 | 42.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.264 | -0.584 | -0.255 | 0.311 |
| 02 | 0.046 | -0.718 | -0.854 | 0.713 |
| 03 | -1.822 | -2.036 | -0.819 | 1.184 |
| 04 | -3.286 | -2.307 | -0.892 | 1.239 |
| 05 | -0.032 | -3.286 | -3.286 | 1.084 |
| 06 | 1.174 | -3.286 | -0.517 | -2.036 |
| 07 | -2.681 | 0.117 | -3.286 | 1.019 |
| 08 | -1.978 | -1.978 | 0.613 | 0.63 |
| 09 | 0.583 | -0.854 | 0.103 | -0.395 |
| 10 | -0.04 | 0.377 | -0.383 | -0.106 |
| 11 | 0.038 | -0.089 | -0.361 | 0.3 |