Transcription factor | HOXC6 | ||||||||
Model | HXC6_HUMAN.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 15 | ||||||||
Quality | D | ||||||||
Consensus | WTGATTTATTWCTTT | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 7 | ||||||||
TF family | HOX-related factors{3.1.1} | ||||||||
TF subfamily | HOX6-7{3.1.1.6} | ||||||||
HGNC | 5128 | ||||||||
EntrezGene | 3223 | ||||||||
UniProt ID | HXC6_HUMAN | ||||||||
UniProt AC | P09630 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 4.638 | 0.146 | 1.021 | 1.196 |
02 | 0.0 | 0.0 | 0.0 | 7.0 |
03 | 0.0 | 0.0 | 7.0 | 0.0 |
04 | 7.0 | 0.0 | 0.0 | 0.0 |
05 | 0.0 | 0.0 | 0.0 | 7.0 |
06 | 0.0 | 0.0 | 0.0 | 7.0 |
07 | 0.0 | 0.0 | 1.05 | 5.95 |
08 | 7.0 | 0.0 | 0.0 | 0.0 |
09 | 0.0 | 0.0 | 0.0 | 7.0 |
10 | 0.0 | 0.0 | 1.05 | 5.95 |
11 | 5.075 | 0.583 | 0.292 | 1.05 |
12 | 0.0 | 5.367 | 1.05 | 0.583 |
13 | 1.05 | 0.0 | 0.0 | 5.95 |
14 | 0.0 | 0.0 | 0.0 | 7.0 |
15 | 0.146 | 0.146 | 1.196 | 5.513 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.829 | -1.263 | -0.395 | -0.285 |
02 | -1.525 | -1.525 | -1.525 | 1.208 |
03 | -1.525 | -1.525 | 1.208 | -1.525 |
04 | 1.208 | -1.525 | -1.525 | -1.525 |
05 | -1.525 | -1.525 | -1.525 | 1.208 |
06 | -1.525 | -1.525 | -1.525 | 1.208 |
07 | -1.525 | -1.525 | -0.375 | 1.057 |
08 | 1.208 | -1.525 | -1.525 | -1.525 |
09 | -1.525 | -1.525 | -1.525 | 1.208 |
10 | -1.525 | -1.525 | -0.375 | 1.057 |
11 | 0.911 | -0.737 | -1.056 | -0.375 |
12 | -1.525 | 0.962 | -0.375 | -0.737 |
13 | -0.375 | -1.525 | -1.525 | 1.057 |
14 | -1.525 | -1.525 | -1.525 | 1.208 |
15 | -1.263 | -1.263 | -0.285 | 0.987 |