Model info
| Transcription factor | HOXB8 | ||||||||
| Model | HXB8_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Consensus | TTGATTRATKv | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 26 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | HOX8{3.1.1.7} | ||||||||
| HGNC | 5119 | ||||||||
| EntrezGene | 3218 | ||||||||
| UniProt ID | HXB8_HUMAN | ||||||||
| UniProt AC | P17481 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 5.225 | 0.225 | 0.225 | 20.725 |
| 02 | 0.0 | 1.0 | 0.0 | 25.4 |
| 03 | 2.0 | 0.0 | 24.4 | 0.0 |
| 04 | 26.4 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 26.4 |
| 06 | 0.0 | 0.0 | 0.0 | 26.4 |
| 07 | 14.7 | 0.0 | 6.7 | 5.0 |
| 08 | 26.4 | 0.0 | 0.0 | 0.0 |
| 09 | 1.0 | 0.0 | 0.0 | 25.4 |
| 10 | 2.7 | 1.8 | 13.7 | 8.2 |
| 11 | 7.7 | 9.6 | 6.4 | 2.7 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.205 | -1.962 | -1.962 | 1.066 |
| 02 | -2.204 | -1.406 | -2.204 | 1.263 |
| 03 | -0.968 | -2.204 | 1.224 | -2.204 |
| 04 | 1.3 | -2.204 | -2.204 | -2.204 |
| 05 | -2.204 | -2.204 | -2.204 | 1.3 |
| 06 | -2.204 | -2.204 | -2.204 | 1.3 |
| 07 | 0.738 | -2.204 | 0.013 | -0.243 |
| 08 | 1.3 | -2.204 | -2.204 | -2.204 |
| 09 | -1.406 | -2.204 | -2.204 | 1.263 |
| 10 | -0.746 | -1.041 | 0.671 | 0.195 |
| 11 | 0.138 | 0.34 | -0.027 | -0.746 |