Model info
| Transcription factor | Hoxb7 | ||||||||
| Model | HXB7_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | C | ||||||||
| Consensus | WTGATTRATK | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 28 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | HOX6-7{3.1.1.6} | ||||||||
| MGI | 96188 | ||||||||
| EntrezGene | 15415 | ||||||||
| UniProt ID | HXB7_MOUSE | ||||||||
| UniProt AC | P09024 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8.121 | 0.253 | 1.152 | 18.462 |
| 02 | 0.0 | 0.0 | 0.0 | 27.988 |
| 03 | 2.023 | 0.0 | 25.965 | 0.0 |
| 04 | 27.988 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 27.988 |
| 06 | 0.0 | 0.0 | 0.0 | 27.988 |
| 07 | 13.151 | 0.0 | 9.105 | 5.733 |
| 08 | 27.089 | 0.899 | 0.0 | 0.0 |
| 09 | 0.0 | 1.911 | 0.0 | 26.078 |
| 10 | 2.529 | 1.517 | 15.174 | 8.767 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.134 | -1.976 | -1.372 | 0.902 |
| 02 | -2.241 | -2.241 | -2.241 | 1.303 |
| 03 | -1.008 | -2.241 | 1.23 | -2.241 |
| 04 | 1.303 | -2.241 | -2.241 | -2.241 |
| 05 | -2.241 | -2.241 | -2.241 | 1.303 |
| 06 | -2.241 | -2.241 | -2.241 | 1.303 |
| 07 | 0.58 | -2.241 | 0.238 | -0.176 |
| 08 | 1.271 | -1.509 | -2.241 | -2.241 |
| 09 | -2.241 | -1.049 | -2.241 | 1.235 |
| 10 | -0.845 | -1.203 | 0.715 | 0.204 |