Model info
| Transcription factor | HOXB3 | ||||||||
| Model | HXB3_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 14 | ||||||||
| Quality | D | ||||||||
| Consensus | hTAATKRbhhhWWh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 3405 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | HOX3{3.1.1.3} | ||||||||
| HGNC | 5114 | ||||||||
| EntrezGene | 3213 | ||||||||
| UniProt ID | HXB3_HUMAN | ||||||||
| UniProt AC | P14651 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 401.75 | 1161.75 | 374.75 | 1464.75 |
| 02 | 203.5 | 191.5 | 156.5 | 2851.5 |
| 03 | 3007.25 | 132.25 | 141.25 | 122.25 |
| 04 | 3399.5 | 0.5 | 2.5 | 0.5 |
| 05 | 0.0 | 20.0 | 19.0 | 3364.0 |
| 06 | 18.0 | 105.0 | 945.0 | 2335.0 |
| 07 | 2339.0 | 48.0 | 913.0 | 103.0 |
| 08 | 339.0 | 1281.0 | 1422.0 | 361.0 |
| 09 | 530.0 | 957.0 | 390.0 | 1526.0 |
| 10 | 701.0 | 536.0 | 510.0 | 1656.0 |
| 11 | 830.75 | 446.75 | 271.75 | 1853.75 |
| 12 | 721.0 | 328.0 | 214.0 | 2140.0 |
| 13 | 752.75 | 315.75 | 275.75 | 2058.75 |
| 14 | 1491.25 | 523.25 | 436.25 | 952.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.748 | 0.311 | -0.817 | 0.542 |
| 02 | -1.423 | -1.483 | -1.683 | 1.208 |
| 03 | 1.261 | -1.849 | -1.784 | -1.926 |
| 04 | 1.383 | -5.819 | -5.237 | -5.819 |
| 05 | -6.039 | -3.656 | -3.702 | 1.373 |
| 06 | -3.751 | -2.075 | 0.105 | 1.008 |
| 07 | 1.01 | -2.836 | 0.07 | -2.094 |
| 08 | -0.917 | 0.408 | 0.513 | -0.854 |
| 09 | -0.472 | 0.117 | -0.777 | 0.583 |
| 10 | -0.193 | -0.461 | -0.51 | 0.665 |
| 11 | -0.024 | -0.642 | -1.136 | 0.778 |
| 12 | -0.165 | -0.949 | -1.373 | 0.921 |
| 13 | -0.122 | -0.987 | -1.122 | 0.882 |
| 14 | 0.56 | -0.485 | -0.666 | 0.112 |