Model info
| Transcription factor | HOXB13 | ||||||||
| Model | HXB13_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | ndKTTTAYKRS | ||||||||
| wAUC | 0.7809640021321019 | ||||||||
| Best AUC | 0.780964002132102 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 3829 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | HOX9-13{3.1.1.8} | ||||||||
| HGNC | 5112 | ||||||||
| EntrezGene | 10481 | ||||||||
| UniProt ID | HXB13_HUMAN | ||||||||
| UniProt AC | Q92826 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1199.5 | 560.5 | 1013.5 | 1055.5 |
| 02 | 1032.75 | 304.75 | 1181.75 | 1309.75 |
| 03 | 260.25 | 124.25 | 368.25 | 3076.25 |
| 04 | 0.75 | 0.75 | 1.75 | 3825.75 |
| 05 | 1.0 | 0.0 | 0.0 | 3828.0 |
| 06 | 238.0 | 2.0 | 1.0 | 3588.0 |
| 07 | 3829.0 | 0.0 | 0.0 | 0.0 |
| 08 | 73.25 | 1499.25 | 55.25 | 2201.25 |
| 09 | 376.5 | 71.5 | 1930.5 | 1450.5 |
| 10 | 2000.75 | 77.75 | 1630.75 | 119.75 |
| 11 | 217.75 | 412.75 | 2925.75 | 272.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.225 | -0.534 | 0.057 | 0.098 |
| 02 | 0.076 | -1.14 | 0.21 | 0.313 |
| 03 | -1.297 | -2.027 | -0.952 | 1.166 |
| 04 | -5.832 | -5.832 | -5.528 | 1.384 |
| 05 | -5.747 | -6.142 | -6.142 | 1.384 |
| 06 | -1.385 | -5.464 | -5.747 | 1.32 |
| 07 | 1.385 | -6.142 | -6.142 | -6.142 |
| 08 | -2.545 | 0.448 | -2.818 | 0.832 |
| 09 | -0.93 | -2.568 | 0.7 | 0.415 |
| 10 | 0.736 | -2.487 | 0.532 | -2.064 |
| 11 | -1.473 | -0.838 | 1.116 | -1.25 |