HXB13_HUMAN.H10DI.B motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

HOXB13

Model

HXB13_HUMAN.H10DI.B

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Origin

HT-SELEX

Model length

14

Quality

B

Consensus

ndTTTTATKRGnbd

wAUC

0.8016602169295227

Best AUC

0.8016602169295226

Benchmark datasets

1

Aligned words

3140

TF family

HOX-related factors{3.1.1}

TF subfamily

HOX9-13{3.1.1.8}

HGNC

5112

EntrezGene

10481

UniProt ID

HXB13_HUMAN

UniProt AC

Q92826

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	4.3891
0.0005	8.1241
0.0001	14.1341

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	308.375	105.125	255.625	301.375	145.375	43.125	156.625	121.375	187.375	63.125	273.625	320.375	198.375	45.125	268.625	346.375
02	58.688	42.188	93.438	645.188	30.688	13.188	20.438	192.188	46.688	16.188	71.438	820.188	58.688	13.188	86.438	931.188
03	0.188	0.188	0.188	194.188	0.188	0.188	0.188	84.188	0.188	0.188	0.188	271.188	0.188	0.188	0.188	2588.188
04	0.0	0.0	0.0	0.75	0.0	0.0	0.0	0.75	0.0	0.0	0.0	0.75	0.0	0.0	0.0	3137.75
05	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	148.0	0.0	0.0	2992.0
06	148.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	2992.0	0.0	0.0	0.0
07	1.0	1299.0	1.0	1839.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
08	0.0	0.0	1.0	0.0	57.0	0.0	1224.0	18.0	0.0	0.0	0.0	1.0	140.0	0.0	454.0	1245.0
09	56.0	0.0	136.0	5.0	0.0	0.0	0.0	0.0	1439.0	1.0	234.0	5.0	216.0	1.0	1036.0	11.0
10	52.0	103.0	1474.0	82.0	0.0	0.0	2.0	0.0	42.75	143.75	1154.75	64.75	0.25	0.25	20.25	0.25
11	20.75	24.75	25.75	23.75	46.0	75.0	55.0	71.0	414.5	724.5	964.5	547.5	28.25	36.25	39.25	43.25
12	91.875	97.875	75.875	243.875	177.875	198.875	140.875	342.875	143.375	285.375	216.375	439.375	114.375	116.375	110.375	344.375
13	130.625	107.625	116.625	172.625	180.875	129.875	123.875	263.875	103.625	105.625	124.625	209.625	300.125	173.125	232.125	665.125

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	0.451	-0.622	0.264	0.428	-0.299	-1.506	-0.225	-0.479	-0.046	-1.129	0.332	0.489	0.011	-1.461	0.313	0.567
02	-1.201	-1.528	-0.739	1.188	-1.842	-2.665	-2.24	-0.021	-1.428	-2.467	-1.006	1.428	-1.201	-2.665	-0.817	1.555
03	-5.652	-5.652	-5.652	-0.011	-5.652	-5.652	-5.652	-0.843	-5.652	-5.652	-5.652	0.323	-5.652	-5.652	-5.652	2.577
04	-5.969	-5.969	-5.969	-5.056	-5.969	-5.969	-5.969	-5.056	-5.969	-5.969	-5.969	-5.056	-5.969	-5.969	-5.969	2.769
05	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-0.281	-5.969	-5.969	2.722
06	-0.281	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	2.722	-5.969	-5.969	-5.969
07	-4.874	1.888	-4.874	2.235	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969	-5.969
08	-5.969	-5.969	-4.874	-5.969	-1.23	-5.969	1.828	-2.364	-5.969	-5.969	-5.969	-4.874	-0.337	-5.969	0.837	1.845
09	-1.248	-5.969	-0.366	-3.577	-5.969	-5.969	-5.969	-5.969	1.99	-4.874	0.176	-3.577	0.096	-4.874	1.662	-2.839
10	-1.321	-0.642	2.014	-0.869	-5.969	-5.969	-4.364	-5.969	-1.515	-0.31	1.77	-1.104	-5.565	-5.565	-2.249	-5.565
11	-2.225	-2.053	-2.014	-2.093	-1.442	-0.958	-1.266	-1.012	0.746	1.304	1.59	1.024	-1.923	-1.678	-1.599	-1.503
12	-0.756	-0.693	-0.946	0.217	-0.098	0.013	-0.331	0.557	-0.313	0.374	0.097	0.805	-0.538	-0.521	-0.574	0.561
13	-0.406	-0.599	-0.519	-0.128	-0.081	-0.412	-0.459	0.295	-0.636	-0.617	-0.453	0.066	0.424	-0.125	0.167	1.219