Model info
| Transcription factor | Hoxa9 | ||||||||
| Model | HXA9_MOUSE.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 14 | ||||||||
| Quality | D | ||||||||
| Consensus | TGACASKTTWAYRR | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 29 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | HOX9-13{3.1.1.8} | ||||||||
| MGI | 96180 | ||||||||
| EntrezGene | 15405 | ||||||||
| UniProt ID | HXA9_MOUSE | ||||||||
| UniProt AC | P09631 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.243 | 0.243 | 0.243 | 28.27 |
| 02 | 0.974 | 0.0 | 28.026 | 0.0 |
| 03 | 25.97 | 1.082 | 0.974 | 0.974 |
| 04 | 2.056 | 26.295 | 0.0 | 0.649 |
| 05 | 24.455 | 3.571 | 0.974 | 0.0 |
| 06 | 0.649 | 3.896 | 21.425 | 3.03 |
| 07 | 1.948 | 3.896 | 6.817 | 16.34 |
| 08 | 0.0 | 0.0 | 0.974 | 28.026 |
| 09 | 0.974 | 0.974 | 0.974 | 26.078 |
| 10 | 10.496 | 0.0 | 1.948 | 16.556 |
| 11 | 23.049 | 1.948 | 0.0 | 4.004 |
| 12 | 1.948 | 11.687 | 0.974 | 14.392 |
| 13 | 5.951 | 0.0 | 17.53 | 5.519 |
| 14 | 15.69 | 2.922 | 10.388 | 0.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.009 | -2.009 | -2.009 | 1.28 |
| 02 | -1.494 | -2.263 | 1.272 | -2.263 |
| 03 | 1.198 | -1.436 | -1.494 | -1.494 |
| 04 | -1.027 | 1.21 | -2.263 | -1.691 |
| 05 | 1.14 | -0.606 | -1.494 | -2.263 |
| 06 | -1.691 | -0.535 | 1.012 | -0.737 |
| 07 | -1.065 | -0.535 | -0.055 | 0.753 |
| 08 | -2.263 | -2.263 | -1.494 | 1.272 |
| 09 | -1.494 | -1.494 | -1.494 | 1.202 |
| 10 | 0.337 | -2.263 | -1.065 | 0.765 |
| 11 | 1.083 | -1.065 | -2.263 | -0.513 |
| 12 | -1.065 | 0.437 | -1.494 | 0.633 |
| 13 | -0.175 | -2.263 | 0.82 | -0.241 |
| 14 | 0.714 | -0.766 | 0.328 | -2.263 |