Model info
Transcription factorHoxa9
ModelHXA9_MOUSE.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length14
Quality
D
ConsensusTGACASKTTWAYRR
wAUC
Best AUC
Benchmark datasets
Aligned words29
TF familyHOX-related factors{3.1.1}
TF subfamilyHOX9-13{3.1.1.8}
MGI96180
EntrezGene15405
UniProt IDHXA9_MOUSE
UniProt ACP09631
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.1891
0.0005 5.1061
0.0001 7.0221
PCM
ACGT
010.2430.2430.24328.27
020.9740.028.0260.0
0325.971.0820.9740.974
042.05626.2950.00.649
0524.4553.5710.9740.0
060.6493.89621.4253.03
071.9483.8966.81716.34
080.00.00.97428.026
090.9740.9740.97426.078
1010.4960.01.94816.556
1123.0491.9480.04.004
121.94811.6870.97414.392
135.9510.017.535.519
1415.692.92210.3880.0
PWM
ACGT
01-2.009-2.009-2.0091.28
02-1.494-2.2631.272-2.263
031.198-1.436-1.494-1.494
04-1.0271.21-2.263-1.691
051.14-0.606-1.494-2.263
06-1.691-0.5351.012-0.737
07-1.065-0.535-0.0550.753
08-2.263-2.263-1.4941.272
09-1.494-1.494-1.4941.202
100.337-2.263-1.0650.765
111.083-1.065-2.263-0.513
12-1.0650.437-1.4940.633
13-0.175-2.2630.82-0.241
140.714-0.7660.328-2.263