Transcription factor | HOXA1 | ||||||||
Model | HXA1_HUMAN.H10MO.C | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 10 | ||||||||
Quality | C | ||||||||
Consensus | nTGATGGATG | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 8 | ||||||||
TF family | HOX-related factors{3.1.1} | ||||||||
TF subfamily | HOX1{3.1.1.1} | ||||||||
HGNC | 5099 | ||||||||
EntrezGene | 3198 | ||||||||
UniProt ID | HXA1_HUMAN | ||||||||
UniProt AC | P49639 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 1.216 | 1.324 | 1.324 | 4.135 |
02 | 0.0 | 0.0 | 2.919 | 5.081 |
03 | 1.081 | 0.0 | 6.919 | 0.0 |
04 | 8.0 | 0.0 | 0.0 | 0.0 |
05 | 0.0 | 0.0 | 0.0 | 8.0 |
06 | 0.0 | 0.0 | 6.054 | 1.946 |
07 | 0.0 | 0.0 | 8.0 | 0.0 |
08 | 6.919 | 1.081 | 0.0 | 0.0 |
09 | 0.0 | 0.0 | 0.0 | 8.0 |
10 | 0.514 | 0.514 | 6.459 | 0.514 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.373 | -0.312 | -0.312 | 0.614 |
02 | -1.578 | -1.578 | 0.311 | 0.799 |
03 | -0.454 | -1.578 | 1.083 | -1.578 |
04 | 1.218 | -1.578 | -1.578 | -1.578 |
05 | -1.578 | -1.578 | -1.578 | 1.218 |
06 | -1.578 | -1.578 | 0.959 | -0.022 |
07 | -1.578 | -1.578 | 1.218 | -1.578 |
08 | 1.083 | -0.454 | -1.578 | -1.578 |
09 | -1.578 | -1.578 | -1.578 | 1.218 |
10 | -0.891 | -0.891 | 1.019 | -0.891 |