Model info
| Transcription factor | HOXA11 | ||||||||
| Model | HXA11_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 13 | ||||||||
| Quality | D | ||||||||
| Consensus | WWWhnWTTTAhdd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 2642 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | HOX9-13{3.1.1.8} | ||||||||
| HGNC | 5101 | ||||||||
| EntrezGene | 3207 | ||||||||
| UniProt ID | HXA11_HUMAN | ||||||||
| UniProt AC | P31270 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 696.25 | 180.25 | 132.25 | 1633.25 |
| 02 | 1494.0 | 241.0 | 152.0 | 755.0 |
| 03 | 1754.25 | 349.25 | 163.25 | 375.25 |
| 04 | 1467.75 | 460.75 | 268.75 | 444.75 |
| 05 | 908.0 | 436.0 | 575.0 | 723.0 |
| 06 | 297.0 | 139.0 | 189.0 | 2017.0 |
| 07 | 0.0 | 0.0 | 2.0 | 2640.0 |
| 08 | 0.0 | 1.0 | 0.0 | 2641.0 |
| 09 | 790.0 | 0.0 | 3.0 | 1849.0 |
| 10 | 2595.75 | 14.75 | 16.75 | 14.75 |
| 11 | 377.25 | 805.25 | 301.25 | 1158.25 |
| 12 | 351.75 | 345.75 | 1319.75 | 624.75 |
| 13 | 1066.75 | 359.75 | 762.75 | 452.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.053 | -1.291 | -1.596 | 0.904 |
| 02 | 0.815 | -1.003 | -1.459 | 0.133 |
| 03 | 0.975 | -0.635 | -1.389 | -0.563 |
| 04 | 0.797 | -0.359 | -0.895 | -0.394 |
| 05 | 0.317 | -0.414 | -0.138 | 0.09 |
| 06 | -0.796 | -1.547 | -1.244 | 1.114 |
| 07 | -5.818 | -5.818 | -5.117 | 1.383 |
| 08 | -5.818 | -5.407 | -5.818 | 1.384 |
| 09 | 0.179 | -5.818 | -4.893 | 1.027 |
| 10 | 1.366 | -3.679 | -3.566 | -3.679 |
| 11 | -0.558 | 0.198 | -0.782 | 0.56 |
| 12 | -0.627 | -0.645 | 0.691 | -0.055 |
| 13 | 0.478 | -0.605 | 0.144 | -0.376 |