Model info
| Transcription factor | HOMEZ | ||||||||
| Model | HOMEZ_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 15 | ||||||||
| Quality | D | ||||||||
| Consensus | ddWWATCGTTTWhhh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 275 | ||||||||
| TF family | HD-ZF factors{3.1.8} | ||||||||
| TF subfamily | ZHX{3.1.8.5} | ||||||||
| HGNC | 20164 | ||||||||
| EntrezGene | 57594 | ||||||||
| UniProt ID | HOMEZ_HUMAN | ||||||||
| UniProt AC | Q8IX15 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 111.0 | 37.0 | 46.0 | 80.0 |
| 02 | 130.75 | 22.75 | 24.75 | 95.75 |
| 03 | 153.0 | 11.0 | 13.0 | 97.0 |
| 04 | 182.25 | 33.25 | 19.25 | 39.25 |
| 05 | 271.0 | 3.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 274.0 |
| 07 | 0.0 | 274.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.0 | 274.0 | 0.0 |
| 09 | 16.0 | 0.0 | 20.0 | 238.0 |
| 10 | 49.0 | 0.0 | 0.0 | 225.0 |
| 11 | 59.0 | 0.0 | 1.0 | 214.0 |
| 12 | 50.25 | 16.25 | 10.25 | 197.25 |
| 13 | 59.5 | 62.5 | 31.5 | 120.5 |
| 14 | 53.75 | 54.75 | 45.75 | 119.75 |
| 15 | 75.75 | 47.75 | 43.75 | 106.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.475 | -0.599 | -0.388 | 0.152 |
| 02 | 0.637 | -1.063 | -0.983 | 0.329 |
| 03 | 0.792 | -1.729 | -1.58 | 0.342 |
| 04 | 0.966 | -0.702 | -1.219 | -0.542 |
| 05 | 1.36 | -2.765 | -3.908 | -3.908 |
| 06 | -3.908 | -3.908 | -3.908 | 1.371 |
| 07 | -3.908 | 1.371 | -3.908 | -3.908 |
| 08 | -3.908 | -3.908 | 1.371 | -3.908 |
| 09 | -1.39 | -3.908 | -1.184 | 1.231 |
| 10 | -0.327 | -3.908 | -3.908 | 1.175 |
| 11 | -0.146 | -3.908 | -3.37 | 1.125 |
| 12 | -0.303 | -1.376 | -1.792 | 1.044 |
| 13 | -0.138 | -0.09 | -0.754 | 0.556 |
| 14 | -0.237 | -0.219 | -0.394 | 0.55 |
| 15 | 0.099 | -0.352 | -0.437 | 0.436 |