Model info
| Transcription factor | HNF4G | ||||||||
| Model | HNF4G_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 14 | ||||||||
| Quality | C | ||||||||
| Consensus | vdKdnCAAAGKbCR | ||||||||
| wAUC | 0.8944098206406537 | ||||||||
| Best AUC | 0.8944098206406538 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | HNF-4 (NR2A){2.1.3.2} | ||||||||
| HGNC | 5026 | ||||||||
| EntrezGene | 3174 | ||||||||
| UniProt ID | HNF4G_HUMAN | ||||||||
| UniProt AC | Q14541 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 153.203 | 100.62 | 194.237 | 51.939 |
| 02 | 229.98 | 21.474 | 186.932 | 61.614 |
| 03 | 48.284 | 16.427 | 386.178 | 49.11 |
| 04 | 86.382 | 42.75 | 177.035 | 193.832 |
| 05 | 79.761 | 154.421 | 123.748 | 142.07 |
| 06 | 5.795 | 437.708 | 13.644 | 42.853 |
| 07 | 475.602 | 11.421 | 11.942 | 1.035 |
| 08 | 442.702 | 1.914 | 53.64 | 1.744 |
| 09 | 455.992 | 3.073 | 35.403 | 5.532 |
| 10 | 1.818 | 4.433 | 489.157 | 4.592 |
| 11 | 7.653 | 4.769 | 219.617 | 267.961 |
| 12 | 11.974 | 216.128 | 78.497 | 193.4 |
| 13 | 10.478 | 421.159 | 18.363 | 50.0 |
| 14 | 339.903 | 40.547 | 64.312 | 55.238 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.201 | -0.214 | 0.436 | -0.861 |
| 02 | 0.604 | -1.704 | 0.398 | -0.695 |
| 03 | -0.932 | -1.951 | 1.12 | -0.915 |
| 04 | -0.364 | -1.05 | 0.344 | 0.434 |
| 05 | -0.442 | 0.209 | -0.01 | 0.127 |
| 06 | -2.846 | 1.244 | -2.12 | -1.047 |
| 07 | 1.327 | -2.278 | -2.238 | -3.889 |
| 08 | 1.256 | -3.597 | -0.83 | -3.647 |
| 09 | 1.285 | -3.309 | -1.231 | -2.883 |
| 10 | -3.625 | -3.051 | 1.355 | -3.025 |
| 11 | -2.621 | -2.997 | 0.558 | 0.756 |
| 12 | -2.236 | 0.542 | -0.458 | 0.432 |
| 13 | -2.353 | 1.206 | -1.849 | -0.898 |
| 14 | 0.993 | -1.101 | -0.653 | -0.801 |