Model info
| Transcription factor | HNF4G | ||||||||
| Model | HNF4G_HUMAN.H10DI.C | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 17 | ||||||||
| Quality | C | ||||||||
| Consensus | nnvdKdnCAAAGKbCWn | ||||||||
| wAUC | 0.9025462307816391 | ||||||||
| Best AUC | 0.9025462307816391 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 505 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | HNF-4 (NR2A){2.1.3.2} | ||||||||
| HGNC | 5026 | ||||||||
| EntrezGene | 3174 | ||||||||
| UniProt ID | HNF4G_HUMAN | ||||||||
| UniProt AC | Q14541 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 42.817 | 20.255 | 33.184 | 14.824 | 80.328 | 35.77 | 9.427 | 43.47 | 34.968 | 15.358 | 26.177 | 12.902 | 36.154 | 22.953 | 36.836 | 33.507 |
| 02 | 65.249 | 35.538 | 79.521 | 13.959 | 40.373 | 30.553 | 13.697 | 9.713 | 35.122 | 21.468 | 41.234 | 7.801 | 14.999 | 21.523 | 62.444 | 5.737 |
| 03 | 81.486 | 1.95 | 56.306 | 16.0 | 73.79 | 11.732 | 8.151 | 15.41 | 70.463 | 4.134 | 95.325 | 26.973 | 11.85 | 2.339 | 15.512 | 7.51 |
| 04 | 12.26 | 12.326 | 201.943 | 11.061 | 2.009 | 0.0 | 15.986 | 2.16 | 15.652 | 11.844 | 125.124 | 22.673 | 1.189 | 0.85 | 56.082 | 7.772 |
| 05 | 3.571 | 2.014 | 17.486 | 8.038 | 5.678 | 1.842 | 0.945 | 16.555 | 79.992 | 22.259 | 138.979 | 157.906 | 5.97 | 6.349 | 18.57 | 12.777 |
| 06 | 17.084 | 16.519 | 34.499 | 27.108 | 7.071 | 4.834 | 0.0 | 20.56 | 23.508 | 39.833 | 65.226 | 47.413 | 29.637 | 90.801 | 30.621 | 44.218 |
| 07 | 2.84 | 68.93 | 3.43 | 2.098 | 4.019 | 136.754 | 1.121 | 10.093 | 2.666 | 112.67 | 7.056 | 7.953 | 2.0 | 115.529 | 6.258 | 15.513 |
| 08 | 11.524 | 0.0 | 0.0 | 0.0 | 417.703 | 2.988 | 13.192 | 0.0 | 16.999 | 0.867 | 0.0 | 0.0 | 32.375 | 1.081 | 2.202 | 0.0 |
| 09 | 422.94 | 3.093 | 50.825 | 1.744 | 3.033 | 0.902 | 0.999 | 0.0 | 10.587 | 1.035 | 2.922 | 0.85 | 0.0 | 0.0 | 0.0 | 0.0 |
| 10 | 398.735 | 2.191 | 32.726 | 2.908 | 5.03 | 0.0 | 0.0 | 0.0 | 47.883 | 0.0 | 6.863 | 0.0 | 1.744 | 0.0 | 0.85 | 0.0 |
| 11 | 2.874 | 4.451 | 443.34 | 2.727 | 0.0 | 0.0 | 2.191 | 0.0 | 0.922 | 0.0 | 39.517 | 0.0 | 0.0 | 0.0 | 2.908 | 0.0 |
| 12 | 0.0 | 0.0 | 1.978 | 1.818 | 0.92 | 0.0 | 0.0 | 3.531 | 8.042 | 7.508 | 200.457 | 271.949 | 0.0 | 0.0 | 0.0 | 2.727 |
| 13 | 0.0 | 3.952 | 0.929 | 4.082 | 0.0 | 3.577 | 1.931 | 2.0 | 0.969 | 31.657 | 43.437 | 126.372 | 12.251 | 174.12 | 28.029 | 65.625 |
| 14 | 0.0 | 13.22 | 0.0 | 0.0 | 5.619 | 185.972 | 0.0 | 21.715 | 0.876 | 55.828 | 8.585 | 9.038 | 4.055 | 151.891 | 14.579 | 27.554 |
| 15 | 8.458 | 0.0 | 2.091 | 0.0 | 289.687 | 31.659 | 34.001 | 51.564 | 17.042 | 0.0 | 3.12 | 3.002 | 26.436 | 7.686 | 15.513 | 8.672 |
| 16 | 93.719 | 81.567 | 115.458 | 50.878 | 14.759 | 5.08 | 2.382 | 17.123 | 8.981 | 18.998 | 19.233 | 7.513 | 14.186 | 19.85 | 17.513 | 11.689 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 0.314 | -0.425 | 0.061 | -0.73 | 0.939 | 0.136 | -1.168 | 0.329 | 0.113 | -0.696 | -0.173 | -0.865 | 0.146 | -0.302 | 0.165 | 0.071 |
| 02 | 0.732 | 0.129 | 0.929 | -0.789 | 0.255 | -0.02 | -0.807 | -1.14 | 0.118 | -0.368 | 0.276 | -1.349 | -0.719 | -0.365 | 0.688 | -1.64 |
| 03 | 0.953 | -2.603 | 0.585 | -0.656 | 0.854 | -0.957 | -1.308 | -0.692 | 0.808 | -1.943 | 1.109 | -0.143 | -0.948 | -2.449 | -0.686 | -1.386 |
| 04 | -0.915 | -0.91 | 1.858 | -1.014 | -2.578 | -4.398 | -0.657 | -2.517 | -0.677 | -0.948 | 1.38 | -0.314 | -2.997 | -3.239 | 0.581 | -1.353 |
| 05 | -2.076 | -2.576 | -0.569 | -1.321 | -1.65 | -2.65 | -3.165 | -0.622 | 0.935 | -0.332 | 1.485 | 1.612 | -1.603 | -1.545 | -0.51 | -0.875 |
| 06 | -0.592 | -0.624 | 0.1 | -0.138 | -1.443 | -1.799 | -4.398 | -0.41 | -0.279 | 0.242 | 0.732 | 0.415 | -0.05 | 1.061 | -0.018 | 0.346 |
| 07 | -2.28 | 0.786 | -2.112 | -2.541 | -1.969 | 1.469 | -3.041 | -1.103 | -2.336 | 1.276 | -1.445 | -1.331 | -2.582 | 1.301 | -1.558 | -0.686 |
| 08 | -0.975 | -4.398 | -4.398 | -4.398 | 2.583 | -2.236 | -0.844 | -4.398 | -0.597 | -3.225 | -4.398 | -4.398 | 0.037 | -3.068 | -2.5 | -4.398 |
| 09 | 2.596 | -2.205 | 0.484 | -2.695 | -2.222 | -3.197 | -3.125 | -4.398 | -1.057 | -3.099 | -2.255 | -3.239 | -4.398 | -4.398 | -4.398 | -4.398 |
| 10 | 2.537 | -2.505 | 0.048 | -2.259 | -1.762 | -4.398 | -4.398 | -4.398 | 0.425 | -4.398 | -1.471 | -4.398 | -2.695 | -4.398 | -3.239 | -4.398 |
| 11 | -2.27 | -1.875 | 2.643 | -2.316 | -4.398 | -4.398 | -2.505 | -4.398 | -3.182 | -4.398 | 0.234 | -4.398 | -4.398 | -4.398 | -2.259 | -4.398 |
| 12 | -4.398 | -4.398 | -2.591 | -2.661 | -3.183 | -4.398 | -4.398 | -2.086 | -1.32 | -1.386 | 1.85 | 2.155 | -4.398 | -4.398 | -4.398 | -2.316 |
| 13 | -4.398 | -1.984 | -3.177 | -1.955 | -4.398 | -2.075 | -2.611 | -2.582 | -3.147 | 0.015 | 0.328 | 1.39 | -0.915 | 1.71 | -0.105 | 0.738 |
| 14 | -4.398 | -0.842 | -4.398 | -4.398 | -1.659 | 1.775 | -4.398 | -0.357 | -3.218 | 0.577 | -1.258 | -1.209 | -1.961 | 1.573 | -0.746 | -0.122 |
| 15 | -1.272 | -4.398 | -2.544 | -4.398 | 2.218 | 0.015 | 0.085 | 0.498 | -0.594 | -4.398 | -2.197 | -2.231 | -0.163 | -1.364 | -0.686 | -1.248 |
| 16 | 1.092 | 0.954 | 1.3 | 0.485 | -0.734 | -1.753 | -2.433 | -0.589 | -1.215 | -0.488 | -0.476 | -1.385 | -0.773 | -0.445 | -0.567 | -0.961 |