Model info
| Transcription factor | Hnf4a | ||||||||
| Model | HNF4A_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Consensus | dGdbCAAAGKbCR | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 1867 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | HNF-4 (NR2A){2.1.3.2} | ||||||||
| MGI | 109128 | ||||||||
| EntrezGene | 15378 | ||||||||
| UniProt ID | HNF4A_MOUSE | ||||||||
| UniProt AC | P49698 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 773.467 | 126.12 | 753.457 | 208.063 |
| 02 | 121.348 | 53.31 | 1562.439 | 124.011 |
| 03 | 364.731 | 111.796 | 852.125 | 532.456 |
| 04 | 190.904 | 682.169 | 505.039 | 482.996 |
| 05 | 109.865 | 1572.52 | 45.949 | 132.775 |
| 06 | 1706.037 | 35.476 | 31.075 | 88.52 |
| 07 | 1418.399 | 45.383 | 380.207 | 17.119 |
| 08 | 1538.392 | 4.398 | 293.72 | 24.597 |
| 09 | 14.1 | 23.129 | 1787.792 | 36.087 |
| 10 | 130.223 | 44.852 | 654.523 | 1031.51 |
| 11 | 90.933 | 840.686 | 202.056 | 727.432 |
| 12 | 83.069 | 1584.91 | 43.733 | 149.395 |
| 13 | 1366.352 | 116.42 | 196.672 | 181.664 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.507 | -1.295 | 0.48 | -0.8 |
| 02 | -1.333 | -2.136 | 1.209 | -1.311 |
| 03 | -0.242 | -1.413 | 0.603 | 0.134 |
| 04 | -0.885 | 0.381 | 0.082 | 0.037 |
| 05 | -1.43 | 1.215 | -2.279 | -1.244 |
| 06 | 1.296 | -2.526 | -2.651 | -1.642 |
| 07 | 1.112 | -2.291 | -0.201 | -3.202 |
| 08 | 1.193 | -4.309 | -0.458 | -2.87 |
| 09 | -3.375 | -2.927 | 1.343 | -2.51 |
| 10 | -1.263 | -2.302 | 0.34 | 0.794 |
| 11 | -1.616 | 0.59 | -0.829 | 0.445 |
| 12 | -1.705 | 1.223 | -2.326 | -1.128 |
| 13 | 1.075 | -1.373 | -0.856 | -0.934 |