Model info
| Transcription factor | HNF4A | ||||||||
| Model | HNF4A_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Consensus | vRKdbCAAAGTYCW | ||||||||
| wAUC | 0.9043811307996555 | ||||||||
| Best AUC | 0.9475901834998455 | ||||||||
| Benchmark datasets | 7 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | RXR-related receptors (NR2){2.1.3} | ||||||||
| TF subfamily | HNF-4 (NR2A){2.1.3.2} | ||||||||
| HGNC | 5024 | ||||||||
| EntrezGene | 3172 | ||||||||
| UniProt ID | HNF4A_HUMAN | ||||||||
| UniProt AC | P41235 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 152.954 | 98.53 | 203.097 | 45.418 |
| 02 | 247.391 | 15.929 | 185.38 | 51.3 |
| 03 | 44.377 | 25.651 | 382.717 | 47.255 |
| 04 | 97.27 | 34.505 | 150.993 | 217.232 |
| 05 | 65.426 | 193.447 | 111.234 | 129.892 |
| 06 | 9.901 | 454.109 | 5.662 | 30.327 |
| 07 | 482.97 | 1.974 | 9.48 | 5.576 |
| 08 | 408.647 | 6.458 | 69.633 | 15.262 |
| 09 | 439.5 | 0.867 | 57.535 | 2.098 |
| 10 | 2.486 | 3.749 | 489.122 | 4.644 |
| 11 | 20.815 | 3.28 | 87.765 | 388.141 |
| 12 | 26.326 | 281.958 | 44.052 | 147.665 |
| 13 | 10.123 | 447.415 | 3.996 | 38.466 |
| 14 | 358.884 | 38.417 | 38.199 | 64.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.2 | -0.235 | 0.481 | -0.991 |
| 02 | 0.677 | -1.979 | 0.39 | -0.873 |
| 03 | -1.014 | -1.537 | 1.111 | -0.953 |
| 04 | -0.247 | -1.256 | 0.187 | 0.547 |
| 05 | -0.636 | 0.432 | -0.115 | 0.038 |
| 06 | -2.402 | 1.281 | -2.864 | -1.379 |
| 07 | 1.343 | -3.58 | -2.44 | -2.876 |
| 08 | 1.176 | -2.76 | -0.575 | -2.018 |
| 09 | 1.249 | -3.957 | -0.762 | -3.545 |
| 10 | -3.445 | -3.172 | 1.355 | -3.017 |
| 11 | -1.733 | -3.265 | -0.348 | 1.125 |
| 12 | -1.513 | 0.807 | -1.021 | 0.165 |
| 13 | -2.383 | 1.266 | -3.127 | -1.151 |
| 14 | 1.047 | -1.153 | -1.158 | -0.65 |