HNF4A_HUMAN.H10DI.A motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

HNF4A

Model

HNF4A_HUMAN.H10DI.A

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Origin

ChIP-Seq

Model length

16

Quality

A

Consensus

nvRGdnCAAAGKYCWn

wAUC

0.9115729686109377

Best AUC

0.959725052586647

Benchmark datasets

7

Aligned words

503

TF family

RXR-related receptors (NR2){2.1.3}

TF subfamily

HNF-4 (NR2A){2.1.3.2}

HGNC

5024

EntrezGene

3172

UniProt ID

HNF4A_HUMAN

UniProt AC

P41235

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	6.2961
0.0005	8.5521
0.0001	13.2341

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	67.48	25.584	66.259	21.663	33.427	21.184	8.625	30.475	42.153	19.487	21.28	5.187	20.384	25.449	77.823	13.538
02	96.842	4.121	42.998	19.485	56.599	1.007	13.853	20.245	89.536	3.648	68.084	12.719	25.531	2.956	30.317	12.06
03	16.92	5.867	220.623	25.098	0.873	2.757	6.914	1.188	13.344	6.394	116.506	19.006	1.367	0.0	59.302	3.841
04	12.976	0.0	11.692	7.836	4.57	0.0	0.0	10.447	82.839	24.56	150.667	145.28	10.301	4.579	11.973	22.279
05	23.167	23.078	28.457	35.984	5.825	7.566	0.0	15.748	33.955	28.079	59.754	52.544	13.967	100.302	19.291	52.282
06	0.0	68.152	3.706	5.057	1.028	142.139	2.538	13.32	0.0	96.434	0.948	10.12	0.985	143.033	2.729	9.811
07	2.012	0.0	0.0	0.0	444.034	1.007	4.717	0.0	9.921	0.0	0.0	0.0	37.348	0.0	0.96	0.0
08	459.712	2.16	28.393	3.05	1.007	0.0	0.0	0.0	4.787	0.0	0.89	0.0	0.0	0.0	0.0	0.0
09	439.63	0.0	23.899	1.978	0.96	0.0	1.2	0.0	29.283	0.0	0.0	0.0	3.05	0.0	0.0	0.0
10	6.087	5.04	453.033	8.763	0.0	0.0	0.0	0.0	0.0	0.0	25.099	0.0	0.0	0.0	1.978	0.0
11	0.0	0.0	2.919	3.168	4.044	0.0	0.0	0.996	15.992	2.102	115.147	346.869	0.0	0.0	0.856	7.907
12	4.207	3.498	0.948	11.383	0.0	0.0	0.0	2.102	2.133	18.061	10.361	88.367	23.123	246.929	19.644	69.245
13	0.0	26.565	1.992	0.905	4.019	232.281	0.0	32.188	2.004	25.23	0.0	3.718	2.878	144.054	1.038	23.127
14	5.915	1.2	1.785	0.0	347.988	15.953	13.66	50.53	0.0	0.0	3.03	0.0	27.494	5.535	19.986	6.923
15	115.868	85.726	103.177	76.626	7.885	1.007	3.426	10.37	10.643	10.004	12.146	5.668	8.698	20.136	10.143	18.476

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	0.763	-0.197	0.745	-0.361	0.067	-0.383	-1.256	-0.025	0.296	-0.465	-0.379	-1.736	-0.421	-0.203	0.905	-0.821
02	1.123	-1.948	0.316	-0.465	0.588	-3.121	-0.798	-0.427	1.045	-2.059	0.772	-0.881	-0.199	-2.247	-0.03	-0.933
03	-0.603	-1.621	1.944	-0.216	-3.222	-2.309	-1.466	-2.999	-0.835	-1.54	1.307	-0.489	-2.892	-4.4	0.635	-2.012
04	-0.862	-4.4	-0.963	-1.347	-1.853	-4.4	-4.4	-1.072	0.967	-0.238	1.563	1.527	-1.085	-1.852	-0.94	-0.333
05	-0.295	-0.299	-0.092	0.139	-1.628	-1.381	-4.4	-0.673	0.082	-0.106	0.642	0.515	-0.79	1.158	-0.475	0.51
06	-4.4	0.773	-2.045	-1.76	-3.106	1.505	-2.38	-0.836	-4.4	1.119	-3.165	-1.102	-3.137	1.511	-2.317	-1.132
07	-2.579	-4.4	-4.4	-4.4	2.642	-3.121	-1.824	-4.4	-1.121	-4.4	-4.4	-4.4	0.176	-4.4	-3.155	-4.4
08	2.677	-2.519	-0.095	-2.219	-3.121	-4.4	-4.4	-4.4	-1.81	-4.4	-3.209	-4.4	-4.4	-4.4	-4.4	-4.4
09	2.632	-4.4	-0.264	-2.593	-3.155	-4.4	-2.992	-4.4	-0.064	-4.4	-4.4	-4.4	-2.219	-4.4	-4.4	-4.4
10	-1.586	-1.763	2.662	-1.24	-4.4	-4.4	-4.4	-4.4	-4.4	-4.4	-0.216	-4.4	-4.4	-4.4	-2.593	-4.4
11	-4.4	-4.4	-2.258	-2.186	-1.965	-4.4	-4.4	-3.129	-0.658	-2.542	1.295	2.396	-4.4	-4.4	-3.236	-1.339
12	-1.929	-2.097	-3.165	-0.989	-4.4	-4.4	-4.4	-2.542	-2.53	-0.539	-1.08	1.032	-0.297	2.056	-0.457	0.789
13	-4.4	-0.16	-2.587	-3.197	-1.971	1.995	-4.4	0.029	-2.582	-0.211	-4.4	-2.042	-2.271	1.519	-3.099	-0.297
14	-1.613	-2.992	-2.678	-4.4	2.399	-0.661	-0.812	0.476	-4.4	-4.4	-2.225	-4.4	-0.126	-1.675	-0.44	-1.465
15	1.301	1.001	1.186	0.89	-1.341	-3.121	-2.115	-1.079	-1.054	-1.113	-0.926	-1.653	-1.248	-0.433	-1.1	-0.517