Model info
| Transcription factor | HMX3 | ||||||||
| Model | HMX3_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | nnYTAATTGbh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 38692 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NK-5/HMX{3.1.2.18} | ||||||||
| HGNC | 5019 | ||||||||
| EntrezGene | 340784 | ||||||||
| UniProt ID | HMX3_HUMAN | ||||||||
| UniProt AC | A6NHT5 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8778.5 | 11110.5 | 8262.5 | 10486.5 |
| 02 | 8657.25 | 8435.25 | 12823.25 | 8722.25 |
| 03 | 2712.5 | 3475.5 | 2672.5 | 29777.5 |
| 04 | 768.0 | 580.0 | 532.0 | 36758.0 |
| 05 | 37025.25 | 22.25 | 1456.25 | 134.25 |
| 06 | 38375.0 | 23.0 | 215.0 | 25.0 |
| 07 | 82.0 | 34.0 | 9445.0 | 29077.0 |
| 08 | 98.25 | 2847.25 | 316.25 | 35376.25 |
| 09 | 129.0 | 77.0 | 38332.0 | 100.0 |
| 10 | 6656.25 | 14956.25 | 10149.25 | 6876.25 |
| 11 | 5071.0 | 8847.0 | 4452.0 | 20268.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.096 | 0.14 | -0.156 | 0.082 |
| 02 | -0.11 | -0.135 | 0.283 | -0.102 |
| 03 | -1.269 | -1.022 | -1.284 | 1.126 |
| 04 | -2.529 | -2.808 | -2.894 | 1.336 |
| 05 | 1.343 | -5.961 | -1.891 | -4.257 |
| 06 | 1.379 | -5.932 | -3.793 | -5.857 |
| 07 | -4.738 | -5.575 | -0.022 | 1.102 |
| 08 | -4.562 | -1.221 | -3.411 | 1.298 |
| 09 | -4.296 | -4.798 | 1.378 | -4.545 |
| 10 | -0.372 | 0.437 | 0.049 | -0.34 |
| 11 | -0.644 | -0.088 | -0.774 | 0.741 |