Model info
| Transcription factor | HMX1 | ||||||||
| Model | HMX1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Consensus | dYTAATTGnYnnWTWAK | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 34 | ||||||||
| TF family | NK-related factors{3.1.2} | ||||||||
| TF subfamily | NK-5/HMX{3.1.2.18} | ||||||||
| HGNC | 5017 | ||||||||
| EntrezGene | 3166 | ||||||||
| UniProt ID | HMX1_HUMAN | ||||||||
| UniProt AC | Q9NP08 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 6.75 | 4.75 | 11.75 | 10.75 |
| 02 | 4.25 | 6.25 | 2.25 | 21.25 |
| 03 | 0.0 | 6.0 | 0.0 | 28.0 |
| 04 | 34.0 | 0.0 | 0.0 | 0.0 |
| 05 | 34.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 5.0 | 29.0 |
| 07 | 0.0 | 0.0 | 0.0 | 34.0 |
| 08 | 5.0 | 0.0 | 29.0 | 0.0 |
| 09 | 10.0 | 11.0 | 2.0 | 11.0 |
| 10 | 2.0 | 4.0 | 2.0 | 26.0 |
| 11 | 7.0 | 7.0 | 2.0 | 18.0 |
| 12 | 5.0 | 6.0 | 6.0 | 17.0 |
| 13 | 4.0 | 3.0 | 1.0 | 26.0 |
| 14 | 3.25 | 0.25 | 0.25 | 30.25 |
| 15 | 25.5 | 0.5 | 3.5 | 4.5 |
| 16 | 28.5 | 0.5 | 0.5 | 4.5 |
| 17 | 2.0 | 1.0 | 8.0 | 23.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.206 | -0.51 | 0.297 | 0.215 |
| 02 | -0.603 | -0.274 | -1.097 | 0.858 |
| 03 | -2.365 | -0.31 | -2.365 | 1.124 |
| 04 | 1.313 | -2.365 | -2.365 | -2.365 |
| 05 | 1.313 | -2.365 | -2.365 | -2.365 |
| 06 | -2.365 | -2.365 | -0.467 | 1.158 |
| 07 | -2.365 | -2.365 | -2.365 | 1.313 |
| 08 | -0.467 | -2.365 | 1.158 | -2.365 |
| 09 | 0.148 | 0.236 | -1.18 | 0.236 |
| 10 | -1.18 | -0.653 | -1.18 | 1.053 |
| 11 | -0.174 | -0.174 | -1.18 | 0.699 |
| 12 | -0.467 | -0.31 | -0.31 | 0.645 |
| 13 | -0.653 | -0.883 | -1.607 | 1.053 |
| 14 | -0.82 | -2.115 | -2.115 | 1.199 |
| 15 | 1.034 | -1.916 | -0.761 | -0.556 |
| 16 | 1.142 | -1.916 | -1.916 | -0.556 |
| 17 | -1.18 | -1.607 | -0.055 | 0.934 |