Transcription factor | Hmga2 | ||||||||
Model | HMGA2_MOUSE.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 15 | ||||||||
Quality | D | ||||||||
Consensus | AATAWhSSSSAATAT | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 75 | ||||||||
TF family | HMGA factors{8.2.1} | ||||||||
TF subfamily | HMGA2 (HMGI-C){8.2.1.0.2} | ||||||||
MGI | 101761 | ||||||||
EntrezGene | 15364 | ||||||||
UniProt ID | HMGA2_MOUSE | ||||||||
UniProt AC | P52927 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 71.752 | 1.241 | 1.241 | 1.241 |
02 | 54.621 | 0.0 | 0.0 | 20.855 |
03 | 11.917 | 0.0 | 0.0 | 63.559 |
04 | 44.69 | 0.0 | 0.0 | 30.786 |
05 | 39.724 | 1.986 | 0.993 | 32.772 |
06 | 12.91 | 20.855 | 8.938 | 32.772 |
07 | 0.0 | 41.71 | 29.793 | 3.972 |
08 | 1.986 | 24.828 | 46.676 | 1.986 |
09 | 0.0 | 37.738 | 32.772 | 4.966 |
10 | 1.986 | 31.779 | 40.717 | 0.993 |
11 | 71.503 | 0.0 | 2.979 | 0.993 |
12 | 59.586 | 0.993 | 0.0 | 14.897 |
13 | 1.986 | 0.993 | 0.0 | 72.497 |
14 | 59.586 | 0.0 | 0.993 | 14.897 |
15 | 1.49 | 1.49 | 1.49 | 71.007 |
A | C | G | T | |
---|---|---|---|---|
01 | 1.295 | -2.151 | -2.151 | -2.151 |
02 | 1.027 | -2.915 | -2.915 | 0.095 |
03 | -0.428 | -2.915 | -2.915 | 1.176 |
04 | 0.83 | -2.915 | -2.915 | 0.468 |
05 | 0.716 | -1.872 | -2.264 | 0.529 |
06 | -0.355 | 0.095 | -0.689 | 0.529 |
07 | -2.915 | 0.763 | 0.437 | -1.373 |
08 | -1.872 | 0.261 | 0.873 | -1.872 |
09 | -2.915 | 0.666 | 0.529 | -1.194 |
10 | -1.872 | 0.499 | 0.74 | -2.264 |
11 | 1.292 | -2.915 | -1.592 | -2.264 |
12 | 1.112 | -2.264 | -2.915 | -0.222 |
13 | -1.872 | -2.264 | -2.915 | 1.305 |
14 | 1.112 | -2.915 | -2.264 | -0.222 |
15 | -2.049 | -2.049 | -2.049 | 1.285 |