Model info
| Transcription factor | HMBOX1 | ||||||||
| Model | HMBX1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | dnYTRGTTAvn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 157 | ||||||||
| TF family | POU domain factors{3.1.10} | ||||||||
| TF subfamily | HNF1-like factors{3.1.10.7} | ||||||||
| HGNC | 26137 | ||||||||
| EntrezGene | 79618 | ||||||||
| UniProt ID | HMBX1_HUMAN | ||||||||
| UniProt AC | Q6NT76 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 54.5 | 19.5 | 36.5 | 46.5 |
| 02 | 53.75 | 28.75 | 49.75 | 24.75 |
| 03 | 10.5 | 90.5 | 17.5 | 38.5 |
| 04 | 1.25 | 0.25 | 3.25 | 152.25 |
| 05 | 94.0 | 0.0 | 62.0 | 1.0 |
| 06 | 0.0 | 0.0 | 157.0 | 0.0 |
| 07 | 0.0 | 0.0 | 6.0 | 151.0 |
| 08 | 18.0 | 0.0 | 2.0 | 137.0 |
| 09 | 156.0 | 0.0 | 1.0 | 0.0 |
| 10 | 56.25 | 57.25 | 26.25 | 17.25 |
| 11 | 28.0 | 47.0 | 38.0 | 44.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.319 | -0.668 | -0.07 | 0.165 |
| 02 | 0.306 | -0.3 | 0.23 | -0.443 |
| 03 | -1.237 | 0.818 | -0.77 | -0.019 |
| 04 | -2.78 | -3.287 | -2.194 | 1.332 |
| 05 | 0.855 | -3.467 | 0.446 | -2.884 |
| 06 | -3.467 | -3.467 | 1.363 | -3.467 |
| 07 | -3.467 | -3.467 | -1.719 | 1.324 |
| 08 | -0.743 | -3.467 | -2.519 | 1.228 |
| 09 | 1.356 | -3.467 | -2.884 | -3.467 |
| 10 | 0.35 | 0.368 | -0.387 | -0.783 |
| 11 | -0.325 | 0.175 | -0.031 | 0.111 |