Model info
| Transcription factor | HIF1A | ||||||||
| Model | HIF1A_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Consensus | vbvbACGTGMvb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 501 | ||||||||
| TF family | PAS domain factors{1.2.5} | ||||||||
| TF subfamily | Ahr-like factors{1.2.5.1} | ||||||||
| HGNC | 4910 | ||||||||
| EntrezGene | 3091 | ||||||||
| UniProt ID | HIF1A_HUMAN | ||||||||
| UniProt AC | Q16665 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 49.351 | 150.768 | 253.095 | 45.703 |
| 02 | 55.397 | 177.526 | 173.395 | 92.599 |
| 03 | 67.553 | 181.65 | 232.703 | 17.011 |
| 04 | 37.033 | 99.209 | 107.467 | 255.209 |
| 05 | 423.984 | 0.515 | 72.875 | 1.544 |
| 06 | 0.0 | 498.402 | 0.0 | 0.515 |
| 07 | 0.0 | 1.029 | 497.373 | 0.515 |
| 08 | 0.0 | 0.0 | 0.0 | 498.917 |
| 09 | 0.0 | 0.0 | 498.917 | 0.0 |
| 10 | 103.89 | 294.762 | 51.772 | 48.494 |
| 11 | 67.981 | 131.679 | 232.344 | 66.914 |
| 12 | 31.223 | 153.949 | 195.212 | 118.534 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.909 | 0.187 | 0.701 | -0.983 |
| 02 | -0.796 | 0.349 | 0.326 | -0.294 |
| 03 | -0.603 | 0.372 | 0.618 | -1.917 |
| 04 | -1.186 | -0.226 | -0.147 | 0.71 |
| 05 | 1.215 | -4.112 | -0.529 | -3.708 |
| 06 | -4.398 | 1.376 | -4.398 | -4.112 |
| 07 | -4.398 | -3.89 | 1.374 | -4.112 |
| 08 | -4.398 | -4.398 | -4.398 | 1.377 |
| 09 | -4.398 | -4.398 | 1.377 | -4.398 |
| 10 | -0.18 | 0.853 | -0.862 | -0.926 |
| 11 | -0.597 | 0.054 | 0.616 | -0.612 |
| 12 | -1.349 | 0.208 | 0.443 | -0.05 |