Model info
Transcription factorHand1
ModelHAND1_MOUSE.H10MO.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginHOCOMOCO v9
Model length12
Quality
D
ConsensusdnRTCTGGhWdh
wAUC
Best AUC
Benchmark datasets
Aligned words26
TF familyTal-related factors{1.2.3}
TF subfamilyTwist-like factors{1.2.3.2}
MGI103577
EntrezGene15110
UniProt IDHAND1_MOUSE
UniProt ACQ64279
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.9041
0.0005 5.6571
0.0001 7.1732
PCM
ACGT
014.50.516.54.5
021.09.09.07.0
0310.00.015.01.0
040.02.01.023.0
050.025.01.00.0
060.00.00.026.0
070.00.026.00.0
080.02.023.01.0
099.011.01.05.0
1013.01.02.010.0
115.03.04.014.0
124.255.253.2513.25
PWM
ACGT
01-0.319-1.7160.862-0.319
02-1.3940.2940.2940.066
030.391-2.1950.771-1.394
04-2.195-0.955-1.3941.18
05-2.1951.261-1.394-2.195
06-2.195-2.195-2.1951.299
07-2.195-2.1951.299-2.195
08-2.195-0.9551.18-1.394
090.2940.479-1.394-0.23
100.636-1.394-0.9550.391
11-0.23-0.651-0.4180.706
12-0.368-0.187-0.5880.654