Model info
| Transcription factor | HAND1 | ||||||||
| Model | HAND1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Consensus | dnRTCTGGhWdh | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 26 | ||||||||
| TF family | Tal-related factors{1.2.3} | ||||||||
| TF subfamily | Twist-like factors{1.2.3.2} | ||||||||
| HGNC | 4807 | ||||||||
| EntrezGene | 9421 | ||||||||
| UniProt ID | HAND1_HUMAN | ||||||||
| UniProt AC | O96004 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 4.5 | 0.5 | 16.5 | 4.5 |
| 02 | 1.0 | 9.0 | 9.0 | 7.0 |
| 03 | 10.0 | 0.0 | 15.0 | 1.0 |
| 04 | 0.0 | 2.0 | 1.0 | 23.0 |
| 05 | 0.0 | 25.0 | 1.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 26.0 |
| 07 | 0.0 | 0.0 | 26.0 | 0.0 |
| 08 | 0.0 | 2.0 | 23.0 | 1.0 |
| 09 | 9.0 | 11.0 | 1.0 | 5.0 |
| 10 | 13.0 | 1.0 | 2.0 | 10.0 |
| 11 | 5.0 | 3.0 | 4.0 | 14.0 |
| 12 | 4.25 | 5.25 | 3.25 | 13.25 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.319 | -1.716 | 0.862 | -0.319 |
| 02 | -1.394 | 0.294 | 0.294 | 0.066 |
| 03 | 0.391 | -2.195 | 0.771 | -1.394 |
| 04 | -2.195 | -0.955 | -1.394 | 1.18 |
| 05 | -2.195 | 1.261 | -1.394 | -2.195 |
| 06 | -2.195 | -2.195 | -2.195 | 1.299 |
| 07 | -2.195 | -2.195 | 1.299 | -2.195 |
| 08 | -2.195 | -0.955 | 1.18 | -1.394 |
| 09 | 0.294 | 0.479 | -1.394 | -0.23 |
| 10 | 0.636 | -1.394 | -0.955 | 0.391 |
| 11 | -0.23 | -0.651 | -0.418 | 0.706 |
| 12 | -0.368 | -0.187 | -0.588 | 0.654 |