Model info
| Transcription factor | GSC | ||||||||
| Model | GSC_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | ddvGGATTAdb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 1242 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | GSC{3.1.3.9} | ||||||||
| HGNC | 4612 | ||||||||
| EntrezGene | 145258 | ||||||||
| UniProt ID | GSC_HUMAN | ||||||||
| UniProt AC | P56915 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 586.5 | 147.5 | 282.5 | 224.5 |
| 02 | 461.25 | 147.25 | 357.25 | 275.25 |
| 03 | 220.75 | 413.75 | 446.75 | 159.75 |
| 04 | 65.5 | 78.5 | 1092.5 | 4.5 |
| 05 | 41.0 | 4.0 | 1192.0 | 4.0 |
| 06 | 1238.0 | 3.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.0 | 0.0 | 1241.0 |
| 08 | 0.0 | 0.0 | 0.0 | 1241.0 |
| 09 | 1235.5 | 0.5 | 1.5 | 3.5 |
| 10 | 411.25 | 115.25 | 492.25 | 222.25 |
| 11 | 177.5 | 430.5 | 387.5 | 245.5 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.634 | -0.737 | -0.093 | -0.321 |
| 02 | 0.395 | -0.739 | 0.14 | -0.119 |
| 03 | -0.338 | 0.286 | 0.363 | -0.658 |
| 04 | -1.534 | -1.358 | 1.255 | -3.906 |
| 05 | -1.987 | -3.989 | 1.342 | -3.989 |
| 06 | 1.38 | -4.178 | -5.166 | -5.166 |
| 07 | -5.166 | -5.166 | -5.166 | 1.382 |
| 08 | -5.166 | -5.166 | -5.166 | 1.382 |
| 09 | 1.378 | -4.919 | -4.555 | -4.079 |
| 10 | 0.28 | -0.981 | 0.459 | -0.331 |
| 11 | -0.554 | 0.326 | 0.221 | -0.233 |