Model info
| Transcription factor | GSC2 | ||||||||
| Model | GSC2_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | ddvGGATKRRn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 610 | ||||||||
| TF family | Paired-related HD factors{3.1.3} | ||||||||
| TF subfamily | GSC{3.1.3.9} | ||||||||
| HGNC | 4613 | ||||||||
| EntrezGene | 2928 | ||||||||
| UniProt ID | GSC2_HUMAN | ||||||||
| UniProt AC | O15499 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 260.25 | 38.25 | 253.25 | 58.25 |
| 02 | 72.0 | 35.0 | 283.0 | 220.0 |
| 03 | 148.5 | 286.5 | 116.5 | 58.5 |
| 04 | 15.0 | 61.0 | 530.0 | 4.0 |
| 05 | 23.0 | 4.0 | 581.0 | 2.0 |
| 06 | 355.0 | 0.0 | 255.0 | 0.0 |
| 07 | 20.0 | 39.0 | 1.0 | 550.0 |
| 08 | 19.0 | 15.0 | 181.0 | 395.0 |
| 09 | 352.0 | 13.0 | 217.0 | 28.0 |
| 10 | 121.75 | 34.75 | 396.75 | 56.75 |
| 11 | 86.75 | 144.75 | 218.75 | 159.75 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.53 | -1.352 | 0.503 | -0.946 |
| 02 | -0.739 | -1.437 | 0.613 | 0.363 |
| 03 | -0.026 | 0.626 | -0.266 | -0.942 |
| 04 | -2.228 | -0.901 | 1.238 | -3.314 |
| 05 | -1.835 | -3.314 | 1.33 | -3.756 |
| 06 | 0.839 | -4.566 | 0.51 | -4.566 |
| 07 | -1.965 | -1.334 | -4.081 | 1.275 |
| 08 | -2.012 | -2.228 | 0.17 | 0.945 |
| 09 | 0.831 | -2.356 | 0.35 | -1.65 |
| 10 | -0.223 | -1.444 | 0.95 | -0.971 |
| 11 | -0.556 | -0.052 | 0.358 | 0.046 |