Model info
| Transcription factor | GRHL1 | ||||||||
| Model | GRHL1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 12 | ||||||||
| Quality | D | ||||||||
| Consensus | RACCGGTTWddY | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 11331 | ||||||||
| TF family | Grainyhead-related factors{6.7.1} | ||||||||
| TF subfamily | GRH-like proteins{6.7.1.1} | ||||||||
| HGNC | 17923 | ||||||||
| EntrezGene | 29841 | ||||||||
| UniProt ID | GRHL1_HUMAN | ||||||||
| UniProt AC | Q9NZI5 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 8553.945 | 633.148 | 1222.135 | 841.771 |
| 02 | 9333.927 | 465.394 | 578.503 | 873.177 |
| 03 | 374.673 | 10072.653 | 384.08 | 419.593 |
| 04 | 512.629 | 9391.357 | 327.35 | 1019.664 |
| 05 | 364.978 | 184.079 | 10041.738 | 660.205 |
| 06 | 23.093 | 352.042 | 10831.407 | 44.458 |
| 07 | 691.193 | 121.592 | 131.323 | 10306.892 |
| 08 | 732.962 | 737.421 | 258.265 | 9522.352 |
| 09 | 1438.463 | 1280.336 | 1004.035 | 7528.165 |
| 10 | 2511.708 | 883.544 | 3562.467 | 4293.281 |
| 11 | 4457.985 | 821.917 | 2821.891 | 3149.208 |
| 12 | 913.4 | 7906.121 | 1127.088 | 1304.391 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.112 | -1.488 | -0.832 | -1.204 |
| 02 | 1.199 | -1.795 | -1.578 | -1.168 |
| 03 | -2.01 | 1.275 | -1.986 | -1.898 |
| 04 | -1.699 | 1.205 | -2.145 | -1.013 |
| 05 | -2.037 | -2.715 | 1.272 | -1.447 |
| 06 | -4.707 | -2.072 | 1.348 | -4.097 |
| 07 | -1.401 | -3.123 | -3.047 | 1.298 |
| 08 | -1.342 | -1.336 | -2.38 | 1.219 |
| 09 | -0.67 | -0.786 | -1.029 | 0.984 |
| 10 | -0.113 | -1.156 | 0.236 | 0.423 |
| 11 | 0.46 | -1.228 | 0.003 | 0.113 |
| 12 | -1.123 | 1.033 | -0.913 | -0.767 |