Model info
| Transcription factor | GMEB2 | ||||||||
| Model | GMEB2_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Consensus | nndTACGTvvn | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 4035 | ||||||||
| TF family | GMEB{5.3.3} | ||||||||
| TF subfamily | GMEB{5.3.3.1} | ||||||||
| HGNC | 4371 | ||||||||
| EntrezGene | 26205 | ||||||||
| UniProt ID | GMEB2_HUMAN | ||||||||
| UniProt AC | Q9UKD1 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 668.264 | 994.86 | 1197.751 | 841.436 |
| 02 | 536.558 | 956.762 | 1178.529 | 1030.463 |
| 03 | 402.851 | 266.66 | 1205.878 | 1826.923 |
| 04 | 135.561 | 80.596 | 94.878 | 3391.278 |
| 05 | 2511.568 | 8.895 | 1157.27 | 24.579 |
| 06 | 26.938 | 3499.467 | 116.326 | 59.581 |
| 07 | 6.822 | 0.319 | 3672.791 | 22.38 |
| 08 | 48.331 | 40.425 | 127.009 | 3486.547 |
| 09 | 1560.704 | 863.538 | 900.782 | 377.288 |
| 10 | 1701.148 | 491.203 | 1103.055 | 406.906 |
| 11 | 674.418 | 866.092 | 958.548 | 1203.254 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.325 | 0.072 | 0.257 | -0.095 |
| 02 | -0.544 | 0.033 | 0.241 | 0.107 |
| 03 | -0.829 | -1.239 | 0.264 | 0.679 |
| 04 | -1.908 | -2.418 | -2.259 | 1.297 |
| 05 | 0.997 | -4.439 | 0.223 | -3.55 |
| 06 | -3.466 | 1.328 | -2.059 | -2.711 |
| 07 | -4.649 | -5.968 | 1.377 | -3.637 |
| 08 | -2.913 | -3.084 | -1.972 | 1.325 |
| 09 | 0.522 | -0.069 | -0.027 | -0.894 |
| 10 | 0.608 | -0.632 | 0.175 | -0.819 |
| 11 | -0.316 | -0.066 | 0.035 | 0.262 |