Model info
| Transcription factor | Gfi1b | ||||||||
| Model | GFI1B_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Consensus | RCWSWGRTTKv | ||||||||
| wAUC | 0.8213722759493574 | ||||||||
| Best AUC | 0.8213722759493574 | ||||||||
| Benchmark datasets | 1 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | More than 3 adjacent zinc finger factors{2.3.3} | ||||||||
| TF subfamily | GFI1 factors{2.3.3.21} | ||||||||
| MGI | 1276578 | ||||||||
| EntrezGene | 14582 | ||||||||
| UniProt ID | GFI1B_MOUSE | ||||||||
| UniProt AC | O70237 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 72.873 | 35.048 | 341.557 | 50.522 |
| 02 | 27.732 | 408.029 | 30.118 | 34.121 |
| 03 | 168.969 | 60.882 | 9.661 | 260.489 |
| 04 | 2.901 | 166.518 | 315.667 | 14.914 |
| 05 | 241.985 | 8.183 | 16.021 | 233.811 |
| 06 | 0.0 | 0.0 | 500.0 | 0.0 |
| 07 | 368.907 | 33.643 | 94.652 | 2.799 |
| 08 | 0.921 | 6.693 | 11.543 | 480.843 |
| 09 | 2.942 | 12.02 | 2.112 | 482.926 |
| 10 | 33.524 | 48.71 | 122.001 | 295.764 |
| 11 | 107.184 | 155.34 | 178.844 | 58.631 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.531 | -1.241 | 0.997 | -0.888 |
| 02 | -1.464 | 1.174 | -1.385 | -1.266 |
| 03 | 0.298 | -0.707 | -2.423 | 0.728 |
| 04 | -3.347 | 0.284 | 0.919 | -2.039 |
| 05 | 0.655 | -2.565 | -1.974 | 0.62 |
| 06 | -4.4 | -4.4 | 1.377 | -4.4 |
| 07 | 1.074 | -1.28 | -0.274 | -3.37 |
| 08 | -3.935 | -2.731 | -2.268 | 1.338 |
| 09 | -3.338 | -2.233 | -3.542 | 1.342 |
| 10 | -1.283 | -0.923 | -0.024 | 0.854 |
| 11 | -0.152 | 0.215 | 0.354 | -0.743 |