Model info
| Transcription factor | NR3C1 | ||||||||
| Model | GCR_HUMAN.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 7 | ||||||||
| Quality | S | ||||||||
| Consensus | RGRACAd | ||||||||
| wAUC | 0.6891952268076936 | ||||||||
| Best AUC | 0.7483470197653757 | ||||||||
| Benchmark datasets | 15 | ||||||||
| Aligned words | 4629 | ||||||||
| TF family | Steroid hormone receptors (NR3){2.1.1} | ||||||||
| TF subfamily | GR-like receptors (NR3C){2.1.1.1} | ||||||||
| HGNC | 7978 | ||||||||
| EntrezGene | 2908 | ||||||||
| UniProt ID | GCR_HUMAN | ||||||||
| UniProt AC | P04150 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2883.28 | 8.389 | 1252.274 | 82.052 |
| 02 | 122.462 | 11.967 | 4054.407 | 37.159 |
| 03 | 3013.53 | 160.309 | 783.787 | 268.369 |
| 04 | 3942.055 | 25.516 | 177.455 | 80.969 |
| 05 | 124.475 | 3567.225 | 525.608 | 8.687 |
| 06 | 3932.474 | 45.943 | 198.86 | 48.717 |
| 07 | 692.157 | 333.18 | 2082.088 | 1118.57 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1.003 | -4.616 | 0.17 | -2.532 |
| 02 | -2.14 | -4.322 | 1.343 | -3.295 |
| 03 | 1.047 | -1.875 | -0.298 | -1.365 |
| 04 | 1.315 | -3.647 | -1.774 | -2.545 |
| 05 | -2.124 | 1.215 | -0.696 | -4.588 |
| 06 | 1.313 | -3.093 | -1.662 | -3.037 |
| 07 | -0.422 | -1.15 | 0.677 | 0.057 |