Model info
| Transcription factor | NR3C1 | ||||||||
| Model | GCR_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Consensus | RGdACWbTvTGThCY | ||||||||
| wAUC | 0.8682312443896397 | ||||||||
| Best AUC | 0.9428366682128629 | ||||||||
| Benchmark datasets | 15 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Steroid hormone receptors (NR3){2.1.1} | ||||||||
| TF subfamily | GR-like receptors (NR3C){2.1.1.1} | ||||||||
| HGNC | 7978 | ||||||||
| EntrezGene | 2908 | ||||||||
| UniProt ID | GCR_HUMAN | ||||||||
| UniProt AC | P04150 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 203.481 | 5.724 | 217.003 | 73.793 |
| 02 | 29.756 | 1.94 | 444.754 | 23.551 |
| 03 | 190.788 | 83.064 | 141.703 | 84.446 |
| 04 | 454.115 | 10.786 | 14.519 | 20.58 |
| 05 | 0.0 | 491.617 | 5.149 | 3.235 |
| 06 | 383.329 | 25.695 | 26.629 | 64.347 |
| 07 | 45.503 | 124.409 | 141.531 | 188.557 |
| 08 | 0.0 | 0.0 | 215.482 | 284.518 |
| 09 | 87.441 | 209.315 | 146.9 | 56.344 |
| 10 | 46.29 | 48.601 | 6.182 | 398.926 |
| 11 | 9.658 | 11.848 | 472.821 | 5.673 |
| 12 | 14.338 | 13.636 | 17.516 | 454.51 |
| 13 | 79.339 | 125.561 | 79.327 | 215.773 |
| 14 | 26.477 | 435.934 | 5.081 | 32.507 |
| 15 | 52.053 | 205.278 | 12.611 | 230.058 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.483 | -2.856 | 0.546 | -0.519 |
| 02 | -1.397 | -3.59 | 1.26 | -1.618 |
| 03 | 0.419 | -0.403 | 0.124 | -0.386 |
| 04 | 1.281 | -2.328 | -2.064 | -1.744 |
| 05 | -4.4 | 1.36 | -2.938 | -3.274 |
| 06 | 1.112 | -1.536 | -1.502 | -0.653 |
| 07 | -0.989 | -0.005 | 0.123 | 0.407 |
| 08 | -4.4 | -4.4 | 0.539 | 0.816 |
| 09 | -0.352 | 0.511 | 0.16 | -0.782 |
| 10 | -0.973 | -0.926 | -2.795 | 1.152 |
| 11 | -2.424 | -2.245 | 1.321 | -2.863 |
| 12 | -2.075 | -2.12 | -1.893 | 1.282 |
| 13 | -0.448 | 0.004 | -0.448 | 0.541 |
| 14 | -1.507 | 1.24 | -2.948 | -1.313 |
| 15 | -0.859 | 0.491 | -2.19 | 0.604 |