GCR_HUMAN.H10DI.A motif - HOmo sapiens COmprehensive MOdel COllection

Model info

Transcription factor

NR3C1

Model

GCR_HUMAN.H10DI.A

Model type

Dinucleotide PWM

LOGO

LOGO (reverse complement)

Origin

ChIP-Seq

Model length

17

Quality

A

Consensus

nRGdACWbTnTGThChn

wAUC

0.868370055101834

Best AUC

0.9416335188326892

Benchmark datasets

15

Aligned words

500

TF family

Steroid hormone receptors (NR3){2.1.1}

TF subfamily

GR-like receptors (NR3C){2.1.1.1}

HGNC

7978

EntrezGene

2908

UniProt ID

GCR_HUMAN

UniProt AC

P04150

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	7.3841
0.0005	9.3821
0.0001	13.5691

PCM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	68.574	4.46	67.498	4.397	85.028	2.245	16.816	25.644	62.306	3.258	53.24	7.909	23.161	1.045	65.248	9.17
02	18.389	0.0	214.055	6.625	4.08	2.076	2.05	2.803	17.447	2.648	174.598	8.11	5.439	0.0	39.864	1.816
03	18.343	2.603	18.141	6.267	3.101	0.856	0.767	0.0	224.211	49.219	94.906	62.233	6.352	6.606	0.792	5.603
04	234.631	4.296	5.929	7.151	55.78	1.862	0.0	1.641	105.809	2.6	2.661	3.536	60.148	2.026	2.823	9.106
05	7.276	429.184	7.05	12.859	0.0	10.784	0.0	0.0	1.74	8.844	0.83	0.0	0.8	17.456	3.177	0.0
06	5.645	0.0	0.767	3.404	364.823	9.858	36.182	55.404	7.077	0.0	0.0	3.98	4.124	0.0	5.982	2.753
07	39.956	103.116	75.077	163.52	0.0	4.415	0.0	5.443	1.633	10.202	11.666	19.43	0.808	23.814	17.413	23.507
08	0.0	9.5	0.0	32.897	0.0	52.259	0.0	89.288	0.0	39.21	0.0	64.946	0.0	41.699	0.0	170.201
09	0.0	0.0	0.0	0.0	42.076	58.136	17.077	25.379	0.0	0.0	0.0	0.0	55.356	127.947	111.489	62.541
10	11.843	5.313	3.108	77.167	18.783	19.571	0.993	146.737	7.353	5.959	0.947	114.305	7.266	1.646	5.915	73.093
11	2.751	1.71	40.784	0.0	8.475	1.855	21.324	0.837	0.0	0.0	10.963	0.0	4.306	10.506	386.536	9.952
12	1.307	0.0	0.0	14.225	1.741	0.767	0.88	10.683	26.749	12.144	6.825	413.891	1.706	0.0	0.0	9.083
13	14.85	5.914	3.689	7.049	2.518	3.229	0.784	6.38	0.0	0.0	2.511	5.194	89.269	99.027	72.99	186.596
14	10.09	91.409	1.729	3.41	5.145	91.427	0.0	11.599	6.955	67.132	2.356	3.53	6.2	177.808	4.319	16.892
15	3.527	16.223	0.784	7.854	68.816	161.741	6.375	190.844	3.435	4.221	0.0	0.748	3.679	8.346	3.861	19.544
16	16.681	21.344	28.419	13.014	56.817	50.886	7.565	75.264	3.045	1.003	4.31	2.662	26.052	58.839	71.838	62.262

PWM

	AA	AC	AG	AT	CA	CC	CG	CT	GA	GC	GG	GT	TA	TC	TG	TT
01	0.779	-1.876	0.763	-1.889	0.993	-2.486	-0.609	-0.195	0.684	-2.161	0.528	-1.338	-0.295	-3.094	0.73	-1.197
02	-0.522	-4.4	1.914	-1.507	-1.957	-2.553	-2.563	-2.294	-0.573	-2.344	1.71	-1.315	-1.692	-4.4	0.241	-2.664
03	-0.524	-2.359	-0.535	-1.559	-2.205	-3.236	-3.31	-4.4	1.96	0.45	1.103	0.683	-1.546	-1.509	-3.288	-1.664
04	2.005	-1.91	-1.611	-1.434	0.574	-2.643	-4.4	-2.747	1.211	-2.36	-2.339	-2.087	0.649	-2.573	-2.288	-1.204
05	-1.418	2.608	-1.448	-0.871	-4.4	-1.041	-4.4	-4.4	-2.699	-1.232	-3.257	-4.4	-3.281	-0.573	-2.183	-4.4
06	-1.657	-4.4	-3.31	-2.121	2.446	-1.127	0.145	0.567	-1.444	-4.4	-4.4	-1.98	-1.948	-4.4	-1.603	-2.31
07	0.243	1.185	0.869	1.645	-4.4	-1.885	-4.4	-1.691	-2.751	-1.094	-0.965	-0.468	-3.275	-0.268	-0.575	-0.281
08	-4.4	-1.163	-4.4	0.051	-4.4	0.509	-4.4	1.042	-4.4	0.224	-4.4	0.725	-4.4	0.285	-4.4	1.685
09	-4.4	-4.4	-4.4	-4.4	0.294	0.615	-0.594	-0.205	-4.4	-4.4	-4.4	-4.4	0.566	1.4	1.263	0.688
10	-0.95	-1.714	-2.203	0.897	-0.501	-0.461	-3.131	1.537	-1.408	-1.606	-3.165	1.288	-1.419	-2.744	-1.613	0.843
11	-2.31	-2.713	0.263	-4.4	-1.272	-2.647	-0.376	-3.251	-4.4	-4.4	-1.025	-4.4	-1.908	-1.066	2.504	-1.118
12	-2.927	-4.4	-4.4	-0.772	-2.699	-3.31	-3.217	-1.05	-0.153	-0.926	-1.478	2.572	-2.715	-4.4	-4.4	-1.206
13	-0.731	-1.613	-2.049	-1.448	-2.387	-2.169	-3.295	-1.542	-4.4	-4.4	-2.39	-1.735	1.042	1.145	0.841	1.777
14	-1.105	1.065	-2.704	-2.12	-1.744	1.065	-4.4	-0.971	-1.461	0.758	-2.445	-2.089	-1.569	1.729	-1.905	-0.605
15	-2.09	-0.644	-3.295	-1.345	0.783	1.634	-1.543	1.799	-2.113	-1.926	-4.4	-3.327	-2.051	-1.287	-2.008	-0.462
16	-0.617	-0.376	-0.094	-0.859	0.592	0.483	-1.381	0.872	-2.221	-3.124	-1.907	-2.339	-0.179	0.627	0.825	0.683