Transcription factor | NR3C1 | ||||||||
Model | GCR_HUMAN.H10DI.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | ChIP-Seq | ||||||||
Model length | 17 | ||||||||
Quality | A | ||||||||
Consensus | nRGdACWbTnTGThChn | ||||||||
wAUC | 0.868370055101834 | ||||||||
Best AUC | 0.9416335188326892 | ||||||||
Benchmark datasets | 15 | ||||||||
Aligned words | 500 | ||||||||
TF family | Steroid hormone receptors (NR3){2.1.1} | ||||||||
TF subfamily | GR-like receptors (NR3C){2.1.1.1} | ||||||||
HGNC | 7978 | ||||||||
EntrezGene | 2908 | ||||||||
UniProt ID | GCR_HUMAN | ||||||||
UniProt AC | P04150 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 68.574 | 4.46 | 67.498 | 4.397 | 85.028 | 2.245 | 16.816 | 25.644 | 62.306 | 3.258 | 53.24 | 7.909 | 23.161 | 1.045 | 65.248 | 9.17 |
02 | 18.389 | 0.0 | 214.055 | 6.625 | 4.08 | 2.076 | 2.05 | 2.803 | 17.447 | 2.648 | 174.598 | 8.11 | 5.439 | 0.0 | 39.864 | 1.816 |
03 | 18.343 | 2.603 | 18.141 | 6.267 | 3.101 | 0.856 | 0.767 | 0.0 | 224.211 | 49.219 | 94.906 | 62.233 | 6.352 | 6.606 | 0.792 | 5.603 |
04 | 234.631 | 4.296 | 5.929 | 7.151 | 55.78 | 1.862 | 0.0 | 1.641 | 105.809 | 2.6 | 2.661 | 3.536 | 60.148 | 2.026 | 2.823 | 9.106 |
05 | 7.276 | 429.184 | 7.05 | 12.859 | 0.0 | 10.784 | 0.0 | 0.0 | 1.74 | 8.844 | 0.83 | 0.0 | 0.8 | 17.456 | 3.177 | 0.0 |
06 | 5.645 | 0.0 | 0.767 | 3.404 | 364.823 | 9.858 | 36.182 | 55.404 | 7.077 | 0.0 | 0.0 | 3.98 | 4.124 | 0.0 | 5.982 | 2.753 |
07 | 39.956 | 103.116 | 75.077 | 163.52 | 0.0 | 4.415 | 0.0 | 5.443 | 1.633 | 10.202 | 11.666 | 19.43 | 0.808 | 23.814 | 17.413 | 23.507 |
08 | 0.0 | 9.5 | 0.0 | 32.897 | 0.0 | 52.259 | 0.0 | 89.288 | 0.0 | 39.21 | 0.0 | 64.946 | 0.0 | 41.699 | 0.0 | 170.201 |
09 | 0.0 | 0.0 | 0.0 | 0.0 | 42.076 | 58.136 | 17.077 | 25.379 | 0.0 | 0.0 | 0.0 | 0.0 | 55.356 | 127.947 | 111.489 | 62.541 |
10 | 11.843 | 5.313 | 3.108 | 77.167 | 18.783 | 19.571 | 0.993 | 146.737 | 7.353 | 5.959 | 0.947 | 114.305 | 7.266 | 1.646 | 5.915 | 73.093 |
11 | 2.751 | 1.71 | 40.784 | 0.0 | 8.475 | 1.855 | 21.324 | 0.837 | 0.0 | 0.0 | 10.963 | 0.0 | 4.306 | 10.506 | 386.536 | 9.952 |
12 | 1.307 | 0.0 | 0.0 | 14.225 | 1.741 | 0.767 | 0.88 | 10.683 | 26.749 | 12.144 | 6.825 | 413.891 | 1.706 | 0.0 | 0.0 | 9.083 |
13 | 14.85 | 5.914 | 3.689 | 7.049 | 2.518 | 3.229 | 0.784 | 6.38 | 0.0 | 0.0 | 2.511 | 5.194 | 89.269 | 99.027 | 72.99 | 186.596 |
14 | 10.09 | 91.409 | 1.729 | 3.41 | 5.145 | 91.427 | 0.0 | 11.599 | 6.955 | 67.132 | 2.356 | 3.53 | 6.2 | 177.808 | 4.319 | 16.892 |
15 | 3.527 | 16.223 | 0.784 | 7.854 | 68.816 | 161.741 | 6.375 | 190.844 | 3.435 | 4.221 | 0.0 | 0.748 | 3.679 | 8.346 | 3.861 | 19.544 |
16 | 16.681 | 21.344 | 28.419 | 13.014 | 56.817 | 50.886 | 7.565 | 75.264 | 3.045 | 1.003 | 4.31 | 2.662 | 26.052 | 58.839 | 71.838 | 62.262 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.779 | -1.876 | 0.763 | -1.889 | 0.993 | -2.486 | -0.609 | -0.195 | 0.684 | -2.161 | 0.528 | -1.338 | -0.295 | -3.094 | 0.73 | -1.197 |
02 | -0.522 | -4.4 | 1.914 | -1.507 | -1.957 | -2.553 | -2.563 | -2.294 | -0.573 | -2.344 | 1.71 | -1.315 | -1.692 | -4.4 | 0.241 | -2.664 |
03 | -0.524 | -2.359 | -0.535 | -1.559 | -2.205 | -3.236 | -3.31 | -4.4 | 1.96 | 0.45 | 1.103 | 0.683 | -1.546 | -1.509 | -3.288 | -1.664 |
04 | 2.005 | -1.91 | -1.611 | -1.434 | 0.574 | -2.643 | -4.4 | -2.747 | 1.211 | -2.36 | -2.339 | -2.087 | 0.649 | -2.573 | -2.288 | -1.204 |
05 | -1.418 | 2.608 | -1.448 | -0.871 | -4.4 | -1.041 | -4.4 | -4.4 | -2.699 | -1.232 | -3.257 | -4.4 | -3.281 | -0.573 | -2.183 | -4.4 |
06 | -1.657 | -4.4 | -3.31 | -2.121 | 2.446 | -1.127 | 0.145 | 0.567 | -1.444 | -4.4 | -4.4 | -1.98 | -1.948 | -4.4 | -1.603 | -2.31 |
07 | 0.243 | 1.185 | 0.869 | 1.645 | -4.4 | -1.885 | -4.4 | -1.691 | -2.751 | -1.094 | -0.965 | -0.468 | -3.275 | -0.268 | -0.575 | -0.281 |
08 | -4.4 | -1.163 | -4.4 | 0.051 | -4.4 | 0.509 | -4.4 | 1.042 | -4.4 | 0.224 | -4.4 | 0.725 | -4.4 | 0.285 | -4.4 | 1.685 |
09 | -4.4 | -4.4 | -4.4 | -4.4 | 0.294 | 0.615 | -0.594 | -0.205 | -4.4 | -4.4 | -4.4 | -4.4 | 0.566 | 1.4 | 1.263 | 0.688 |
10 | -0.95 | -1.714 | -2.203 | 0.897 | -0.501 | -0.461 | -3.131 | 1.537 | -1.408 | -1.606 | -3.165 | 1.288 | -1.419 | -2.744 | -1.613 | 0.843 |
11 | -2.31 | -2.713 | 0.263 | -4.4 | -1.272 | -2.647 | -0.376 | -3.251 | -4.4 | -4.4 | -1.025 | -4.4 | -1.908 | -1.066 | 2.504 | -1.118 |
12 | -2.927 | -4.4 | -4.4 | -0.772 | -2.699 | -3.31 | -3.217 | -1.05 | -0.153 | -0.926 | -1.478 | 2.572 | -2.715 | -4.4 | -4.4 | -1.206 |
13 | -0.731 | -1.613 | -2.049 | -1.448 | -2.387 | -2.169 | -3.295 | -1.542 | -4.4 | -4.4 | -2.39 | -1.735 | 1.042 | 1.145 | 0.841 | 1.777 |
14 | -1.105 | 1.065 | -2.704 | -2.12 | -1.744 | 1.065 | -4.4 | -0.971 | -1.461 | 0.758 | -2.445 | -2.089 | -1.569 | 1.729 | -1.905 | -0.605 |
15 | -2.09 | -0.644 | -3.295 | -1.345 | 0.783 | 1.634 | -1.543 | 1.799 | -2.113 | -1.926 | -4.4 | -3.327 | -2.051 | -1.287 | -2.008 | -0.462 |
16 | -0.617 | -0.376 | -0.094 | -0.859 | 0.592 | 0.483 | -1.381 | 0.872 | -2.221 | -3.124 | -1.907 | -2.339 | -0.179 | 0.627 | 0.825 | 0.683 |