Model info
Transcription factorNR3C1
ModelGCR_HUMAN.H10DI.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
OriginChIP-Seq
Model length17
Quality
A
ConsensusnRGdACWbTnTGThChn
wAUC
0.868370055101834
Best AUC
0.9416335188326892
Benchmark datasets15
Aligned words500
TF familySteroid hormone receptors (NR3){2.1.1}
TF subfamilyGR-like receptors (NR3C){2.1.1.1}
HGNC7978
EntrezGene2908
UniProt IDGCR_HUMAN
UniProt ACP04150
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.3841
0.0005 9.3821
0.0001 13.5691
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0168.5744.4667.4984.39785.0282.24516.81625.64462.3063.25853.247.90923.1611.04565.2489.17
0218.3890.0214.0556.6254.082.0762.052.80317.4472.648174.5988.115.4390.039.8641.816
0318.3432.60318.1416.2673.1010.8560.7670.0224.21149.21994.90662.2336.3526.6060.7925.603
04234.6314.2965.9297.15155.781.8620.01.641105.8092.62.6613.53660.1482.0262.8239.106
057.276429.1847.0512.8590.010.7840.00.01.748.8440.830.00.817.4563.1770.0
065.6450.00.7673.404364.8239.85836.18255.4047.0770.00.03.984.1240.05.9822.753
0739.956103.11675.077163.520.04.4150.05.4431.63310.20211.66619.430.80823.81417.41323.507
080.09.50.032.8970.052.2590.089.2880.039.210.064.9460.041.6990.0170.201
090.00.00.00.042.07658.13617.07725.3790.00.00.00.055.356127.947111.48962.541
1011.8435.3133.10877.16718.78319.5710.993146.7377.3535.9590.947114.3057.2661.6465.91573.093
112.7511.7140.7840.08.4751.85521.3240.8370.00.010.9630.04.30610.506386.5369.952
121.3070.00.014.2251.7410.7670.8810.68326.74912.1446.825413.8911.7060.00.09.083
1314.855.9143.6897.0492.5183.2290.7846.380.00.02.5115.19489.26999.02772.99186.596
1410.0991.4091.7293.415.14591.4270.011.5996.95567.1322.3563.536.2177.8084.31916.892
153.52716.2230.7847.85468.816161.7416.375190.8443.4354.2210.00.7483.6798.3463.86119.544
1616.68121.34428.41913.01456.81750.8867.56575.2643.0451.0034.312.66226.05258.83971.83862.262
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.779-1.8760.763-1.8890.993-2.486-0.609-0.1950.684-2.1610.528-1.338-0.295-3.0940.73-1.197
02-0.522-4.41.914-1.507-1.957-2.553-2.563-2.294-0.573-2.3441.71-1.315-1.692-4.40.241-2.664
03-0.524-2.359-0.535-1.559-2.205-3.236-3.31-4.41.960.451.1030.683-1.546-1.509-3.288-1.664
042.005-1.91-1.611-1.4340.574-2.643-4.4-2.7471.211-2.36-2.339-2.0870.649-2.573-2.288-1.204
05-1.4182.608-1.448-0.871-4.4-1.041-4.4-4.4-2.699-1.232-3.257-4.4-3.281-0.573-2.183-4.4
06-1.657-4.4-3.31-2.1212.446-1.1270.1450.567-1.444-4.4-4.4-1.98-1.948-4.4-1.603-2.31
070.2431.1850.8691.645-4.4-1.885-4.4-1.691-2.751-1.094-0.965-0.468-3.275-0.268-0.575-0.281
08-4.4-1.163-4.40.051-4.40.509-4.41.042-4.40.224-4.40.725-4.40.285-4.41.685
09-4.4-4.4-4.4-4.40.2940.615-0.594-0.205-4.4-4.4-4.4-4.40.5661.41.2630.688
10-0.95-1.714-2.2030.897-0.501-0.461-3.1311.537-1.408-1.606-3.1651.288-1.419-2.744-1.6130.843
11-2.31-2.7130.263-4.4-1.272-2.647-0.376-3.251-4.4-4.4-1.025-4.4-1.908-1.0662.504-1.118
12-2.927-4.4-4.4-0.772-2.699-3.31-3.217-1.05-0.153-0.926-1.4782.572-2.715-4.4-4.4-1.206
13-0.731-1.613-2.049-1.448-2.387-2.169-3.295-1.542-4.4-4.4-2.39-1.7351.0421.1450.8411.777
14-1.1051.065-2.704-2.12-1.7441.065-4.4-0.971-1.4610.758-2.445-2.089-1.5691.729-1.905-0.605
15-2.09-0.644-3.295-1.3450.7831.634-1.5431.799-2.113-1.926-4.4-3.327-2.051-1.287-2.008-0.462
16-0.617-0.376-0.094-0.8590.5920.483-1.3810.872-2.221-3.124-1.907-2.339-0.1790.6270.8250.683