Model info
| Transcription factor | GBX2 | ||||||||
| Model | GBX2_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Consensus | bYAATTRvbnhhhWWWd | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 12613 | ||||||||
| TF family | HOX-related factors{3.1.1} | ||||||||
| TF subfamily | GBX (Gastrulation brain homeobox){3.1.1.11} | ||||||||
| HGNC | 4186 | ||||||||
| EntrezGene | 2637 | ||||||||
| UniProt ID | GBX2_HUMAN | ||||||||
| UniProt AC | P52951 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1626.68 | 4417.827 | 2263.603 | 2935.901 |
| 02 | 460.134 | 1744.673 | 370.572 | 8668.633 |
| 03 | 10663.071 | 243.142 | 199.535 | 138.264 |
| 04 | 10881.647 | 180.608 | 82.594 | 99.162 |
| 05 | 58.728 | 100.588 | 50.714 | 11033.981 |
| 06 | 0.0 | 289.769 | 118.527 | 10835.716 |
| 07 | 7190.57 | 184.614 | 3862.407 | 6.42 |
| 08 | 1668.521 | 3497.802 | 5058.576 | 1019.112 |
| 09 | 930.119 | 4665.023 | 1447.009 | 4201.861 |
| 10 | 1908.195 | 4350.472 | 2598.771 | 2386.572 |
| 11 | 3151.995 | 3224.82 | 1172.721 | 3694.475 |
| 12 | 3675.547 | 2227.016 | 897.016 | 4444.432 |
| 13 | 4237.275 | 1410.723 | 517.756 | 5078.257 |
| 14 | 6188.877 | 842.141 | 464.122 | 3748.872 |
| 15 | 5738.262 | 507.927 | 361.289 | 4636.533 |
| 16 | 3420.354 | 711.755 | 625.146 | 6486.756 |
| 17 | 3241.496 | 1145.829 | 1738.093 | 5118.592 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.546 | 0.452 | -0.216 | 0.043 |
| 02 | -1.806 | -0.476 | -2.021 | 1.126 |
| 03 | 1.333 | -2.439 | -2.635 | -2.996 |
| 04 | 1.353 | -2.733 | -3.5 | -3.322 |
| 05 | -3.83 | -3.308 | -3.971 | 1.367 |
| 06 | -7.095 | -2.265 | -3.148 | 1.349 |
| 07 | 0.939 | -2.711 | 0.318 | -5.773 |
| 08 | -0.521 | 0.218 | 0.587 | -1.013 |
| 09 | -1.104 | 0.506 | -0.663 | 0.402 |
| 10 | -0.387 | 0.436 | -0.078 | -0.164 |
| 11 | 0.114 | 0.137 | -0.873 | 0.273 |
| 12 | 0.268 | -0.233 | -1.14 | 0.458 |
| 13 | 0.41 | -0.689 | -1.688 | 0.591 |
| 14 | 0.789 | -1.203 | -1.797 | 0.288 |
| 15 | 0.713 | -1.707 | -2.046 | 0.5 |
| 16 | 0.196 | -1.371 | -1.5 | 0.836 |
| 17 | 0.142 | -0.896 | -0.48 | 0.599 |