Model info
| Transcription factor | GATA6 | ||||||||
| Model | GATA6_HUMAN.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 7 | ||||||||
| Quality | S | ||||||||
| Consensus | nhGATAR | ||||||||
| wAUC | 0.7950883436789035 | ||||||||
| Best AUC | 0.848043185473239 | ||||||||
| Benchmark datasets | 2 | ||||||||
| Aligned words | 115 | ||||||||
| TF family | GATA-type zinc fingers{2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors{2.2.1.1} | ||||||||
| HGNC | 4174 | ||||||||
| EntrezGene | 2627 | ||||||||
| UniProt ID | GATA6_HUMAN | ||||||||
| UniProt AC | Q92908 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 30.286 | 26.996 | 26.996 | 29.719 |
| 02 | 57.055 | 12.364 | 7.26 | 37.319 |
| 03 | 1.021 | 0.0 | 112.976 | 0.0 |
| 04 | 111.956 | 1.134 | 0.0 | 0.907 |
| 05 | 0.907 | 0.0 | 0.907 | 112.182 |
| 06 | 80.422 | 0.0 | 1.021 | 32.554 |
| 07 | 74.467 | 11.627 | 17.298 | 10.606 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.058 | -0.052 | -0.052 | 0.04 |
| 02 | 0.674 | -0.784 | -1.257 | 0.26 |
| 03 | -2.6 | -3.222 | 1.347 | -3.222 |
| 04 | 1.338 | -2.55 | -3.222 | -2.653 |
| 05 | -2.653 | -3.222 | -2.653 | 1.34 |
| 06 | 1.011 | -3.222 | -2.6 | 0.128 |
| 07 | 0.936 | -0.84 | -0.474 | -0.923 |