Model info
Transcription factorGATA6
ModelGATA6_HUMAN.H10MO.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
OriginChIP-Seq
Model length14
Quality
B
ConsensusddvAGATAAGRddd
wAUC
0.8613346206025866
Best AUC
0.9192915081248831
Benchmark datasets2
Aligned words500
TF familyGATA-type zinc fingers{2.2.1}
TF subfamilyTwo zinc-finger GATA factors{2.2.1.1}
HGNC4174
EntrezGene2627
UniProt IDGATA6_HUMAN
UniProt ACQ92908
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.6251
0.0005 4.7881
0.0001 7.2161
PCM
ACGT
01138.72459.37129.675172.231
02159.63153.566148.825137.978
03145.181193.641109.58851.59
04356.2073.8894.9135.003
051.1140.935497.9510.0
06497.9640.8640.01.172
070.01.9220.0498.078
08461.8650.05.92532.21
09487.41.0413.1548.406
1043.01854.911396.3255.746
11337.91940.872111.8619.348
12152.18343.54280.521223.754
13273.0325.789102.10999.072
14204.981.669125.32588.105
PWM
ACGT
010.103-0.7310.0360.317
020.242-0.8310.1720.098
030.1480.433-0.13-0.868
041.039-3.146-2.9760.076
05-3.86-3.9291.373-4.4
061.373-3.958-4.4-3.838
07-4.4-3.595-4.41.373
081.298-4.4-2.829-1.321
091.352-3.887-3.292-2.542
10-1.044-0.8071.145-2.853
110.987-1.093-0.11-2.452
120.195-1.032-0.4330.577
130.775-1.532-0.2-0.229
140.489-0.4190.003-0.345