Model info
| Transcription factor | GATA6 | ||||||||
| Model | GATA6_HUMAN.H10MO.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 14 | ||||||||
| Quality | B | ||||||||
| Consensus | ddvAGATAAGRddd | ||||||||
| wAUC | 0.8613346206025866 | ||||||||
| Best AUC | 0.9192915081248831 | ||||||||
| Benchmark datasets | 2 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers{2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors{2.2.1.1} | ||||||||
| HGNC | 4174 | ||||||||
| EntrezGene | 2627 | ||||||||
| UniProt ID | GATA6_HUMAN | ||||||||
| UniProt AC | Q92908 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 138.724 | 59.37 | 129.675 | 172.231 |
| 02 | 159.631 | 53.566 | 148.825 | 137.978 |
| 03 | 145.181 | 193.641 | 109.588 | 51.59 |
| 04 | 356.207 | 3.889 | 4.9 | 135.003 |
| 05 | 1.114 | 0.935 | 497.951 | 0.0 |
| 06 | 497.964 | 0.864 | 0.0 | 1.172 |
| 07 | 0.0 | 1.922 | 0.0 | 498.078 |
| 08 | 461.865 | 0.0 | 5.925 | 32.21 |
| 09 | 487.4 | 1.041 | 3.154 | 8.406 |
| 10 | 43.018 | 54.911 | 396.325 | 5.746 |
| 11 | 337.919 | 40.872 | 111.861 | 9.348 |
| 12 | 152.183 | 43.542 | 80.521 | 223.754 |
| 13 | 273.03 | 25.789 | 102.109 | 99.072 |
| 14 | 204.9 | 81.669 | 125.325 | 88.105 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.103 | -0.731 | 0.036 | 0.317 |
| 02 | 0.242 | -0.831 | 0.172 | 0.098 |
| 03 | 0.148 | 0.433 | -0.13 | -0.868 |
| 04 | 1.039 | -3.146 | -2.976 | 0.076 |
| 05 | -3.86 | -3.929 | 1.373 | -4.4 |
| 06 | 1.373 | -3.958 | -4.4 | -3.838 |
| 07 | -4.4 | -3.595 | -4.4 | 1.373 |
| 08 | 1.298 | -4.4 | -2.829 | -1.321 |
| 09 | 1.352 | -3.887 | -3.292 | -2.542 |
| 10 | -1.044 | -0.807 | 1.145 | -2.853 |
| 11 | 0.987 | -1.093 | -0.11 | -2.452 |
| 12 | 0.195 | -1.032 | -0.433 | 0.577 |
| 13 | 0.775 | -1.532 | -0.2 | -0.229 |
| 14 | 0.489 | -0.419 | 0.003 | -0.345 |