Model info
| Transcription factor | Gata3 | ||||||||
| Model | GATA3_MOUSE.H10DI.A | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 23 | ||||||||
| Quality | A | ||||||||
| Consensus | ndnddndbdnnvAGATAAvddnn | ||||||||
| wAUC | 0.8287681066183508 | ||||||||
| Best AUC | 0.8462938671120581 | ||||||||
| Benchmark datasets | 2 | ||||||||
| Aligned words | 504 | ||||||||
| TF family | GATA-type zinc fingers{2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors{2.2.1.1} | ||||||||
| MGI | 95663 | ||||||||
| EntrezGene | 14462 | ||||||||
| UniProt ID | GATA3_MOUSE | ||||||||
| UniProt AC | P23772 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 19.17 | 15.205 | 108.949 | 12.47 | 24.479 | 19.54 | 7.063 | 23.19 | 64.288 | 24.588 | 31.911 | 15.715 | 19.176 | 10.16 | 83.556 | 20.539 |
| 02 | 15.684 | 22.652 | 40.5 | 48.277 | 23.791 | 13.03 | 10.927 | 21.746 | 115.136 | 25.056 | 73.712 | 17.575 | 14.885 | 11.765 | 24.009 | 21.256 |
| 03 | 33.885 | 19.775 | 35.729 | 80.106 | 30.944 | 12.551 | 6.214 | 22.794 | 100.392 | 14.098 | 13.04 | 21.616 | 21.916 | 23.812 | 39.557 | 23.57 |
| 04 | 86.389 | 9.355 | 64.357 | 27.037 | 31.986 | 10.882 | 7.111 | 20.255 | 48.936 | 15.232 | 17.072 | 13.3 | 20.665 | 24.349 | 69.484 | 33.588 |
| 05 | 17.627 | 16.649 | 77.439 | 76.262 | 17.796 | 20.855 | 9.516 | 11.651 | 76.118 | 28.854 | 28.36 | 24.692 | 7.514 | 26.08 | 42.01 | 18.576 |
| 06 | 11.588 | 11.087 | 31.361 | 65.019 | 37.742 | 18.056 | 5.437 | 31.204 | 67.31 | 21.949 | 35.801 | 32.266 | 69.408 | 16.452 | 27.018 | 18.302 |
| 07 | 23.592 | 19.183 | 37.926 | 105.348 | 18.944 | 12.438 | 5.905 | 30.257 | 28.749 | 20.12 | 35.805 | 14.942 | 12.071 | 35.486 | 62.387 | 36.847 |
| 08 | 18.067 | 10.962 | 38.572 | 15.755 | 35.571 | 13.89 | 6.793 | 30.973 | 33.854 | 40.797 | 48.08 | 19.291 | 22.363 | 27.428 | 108.953 | 28.65 |
| 09 | 27.933 | 30.74 | 32.631 | 18.551 | 39.862 | 13.881 | 6.665 | 32.669 | 32.132 | 54.618 | 89.233 | 26.416 | 10.018 | 28.78 | 26.134 | 29.736 |
| 10 | 31.284 | 25.621 | 43.406 | 9.633 | 68.453 | 16.356 | 5.888 | 37.323 | 28.335 | 74.182 | 37.49 | 14.656 | 27.34 | 11.673 | 52.591 | 15.767 |
| 11 | 38.077 | 50.734 | 55.925 | 10.676 | 75.434 | 29.315 | 15.418 | 7.666 | 26.971 | 61.682 | 34.576 | 16.148 | 9.539 | 36.463 | 29.357 | 2.02 |
| 12 | 134.746 | 0.883 | 2.728 | 11.663 | 99.825 | 3.833 | 0.0 | 74.536 | 117.608 | 1.908 | 0.0 | 15.76 | 20.589 | 0.0 | 0.0 | 15.92 |
| 13 | 0.0 | 0.0 | 372.769 | 0.0 | 0.0 | 0.0 | 6.624 | 0.0 | 0.0 | 0.0 | 2.728 | 0.0 | 0.0 | 0.0 | 117.879 | 0.0 |
| 14 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 496.026 | 1.004 | 2.971 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| 15 | 95.521 | 8.596 | 2.985 | 388.923 | 1.004 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.971 | 0.0 | 0.0 | 0.0 | 0.0 |
| 16 | 88.005 | 3.808 | 1.86 | 2.852 | 8.596 | 0.0 | 0.0 | 0.0 | 2.985 | 0.0 | 0.0 | 0.0 | 343.67 | 1.915 | 1.803 | 44.507 |
| 17 | 348.128 | 14.352 | 67.878 | 12.899 | 3.867 | 0.0 | 0.935 | 0.921 | 2.759 | 0.903 | 0.0 | 0.0 | 36.264 | 0.0 | 11.096 | 0.0 |
| 18 | 65.066 | 127.783 | 184.535 | 13.633 | 5.654 | 7.769 | 0.887 | 0.945 | 13.9 | 28.01 | 29.587 | 8.413 | 0.0 | 2.925 | 10.894 | 0.0 |
| 19 | 26.459 | 11.925 | 37.237 | 8.998 | 73.53 | 22.814 | 9.602 | 60.541 | 110.309 | 40.517 | 55.803 | 19.273 | 10.79 | 0.0 | 11.172 | 1.029 |
| 20 | 66.535 | 21.0 | 63.516 | 70.037 | 47.864 | 14.045 | 7.903 | 5.445 | 61.27 | 20.359 | 23.934 | 8.25 | 0.988 | 6.562 | 72.482 | 9.809 |
| 21 | 28.37 | 28.741 | 32.078 | 87.469 | 24.633 | 12.681 | 5.577 | 19.075 | 81.852 | 30.574 | 32.719 | 22.69 | 3.126 | 71.363 | 8.775 | 10.275 |
| 22 | 77.414 | 29.28 | 20.531 | 10.757 | 44.35 | 14.384 | 9.938 | 74.686 | 19.574 | 34.703 | 16.407 | 8.465 | 13.33 | 74.957 | 34.194 | 17.028 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -0.481 | -0.707 | 1.24 | -0.9 | -0.241 | -0.462 | -1.446 | -0.294 | 0.715 | -0.236 | 0.021 | -0.675 | -0.481 | -1.098 | 0.976 | -0.413 |
| 02 | -0.677 | -0.317 | 0.256 | 0.431 | -0.269 | -0.858 | -1.028 | -0.357 | 1.295 | -0.218 | 0.851 | -0.566 | -0.728 | -0.957 | -0.26 | -0.38 |
| 03 | 0.08 | -0.451 | 0.132 | 0.934 | -0.01 | -0.894 | -1.567 | -0.311 | 1.159 | -0.781 | -0.857 | -0.363 | -0.35 | -0.268 | 0.233 | -0.278 |
| 04 | 1.009 | -1.178 | 0.716 | -0.143 | 0.023 | -1.032 | -1.44 | -0.427 | 0.444 | -0.706 | -0.594 | -0.838 | -0.407 | -0.246 | 0.792 | 0.071 |
| 05 | -0.563 | -0.619 | 0.9 | 0.885 | -0.554 | -0.398 | -1.161 | -0.966 | 0.883 | -0.079 | -0.096 | -0.232 | -1.387 | -0.178 | 0.293 | -0.512 |
| 06 | -0.971 | -1.014 | 0.004 | 0.726 | 0.187 | -0.54 | -1.692 | -0.001 | 0.761 | -0.348 | 0.134 | 0.032 | 0.791 | -0.631 | -0.144 | -0.526 |
| 07 | -0.277 | -0.48 | 0.191 | 1.207 | -0.493 | -0.903 | -1.615 | -0.032 | -0.082 | -0.434 | 0.135 | -0.725 | -0.932 | 0.126 | 0.685 | 0.163 |
| 08 | -0.539 | -1.025 | 0.208 | -0.673 | 0.128 | -0.796 | -1.483 | -0.009 | 0.079 | 0.264 | 0.427 | -0.475 | -0.33 | -0.129 | 1.24 | -0.086 |
| 09 | -0.111 | -0.016 | 0.043 | -0.513 | 0.241 | -0.796 | -1.501 | 0.044 | 0.027 | 0.553 | 1.041 | -0.166 | -1.112 | -0.081 | -0.176 | -0.049 |
| 10 | 0.001 | -0.196 | 0.325 | -1.15 | 0.777 | -0.636 | -1.618 | 0.176 | -0.097 | 0.857 | 0.18 | -0.743 | -0.132 | -0.964 | 0.516 | -0.672 |
| 11 | 0.195 | 0.48 | 0.577 | -1.051 | 0.874 | -0.063 | -0.694 | -1.368 | -0.145 | 0.674 | 0.1 | -0.649 | -1.159 | 0.153 | -0.062 | -2.575 |
| 12 | 1.452 | -3.214 | -2.318 | -0.965 | 1.153 | -2.014 | -4.4 | 0.862 | 1.316 | -2.623 | -4.4 | -0.673 | -0.411 | -4.4 | -4.4 | -0.663 |
| 13 | -4.4 | -4.4 | 2.468 | -4.4 | -4.4 | -4.4 | -1.507 | -4.4 | -4.4 | -4.4 | -2.318 | -4.4 | -4.4 | -4.4 | 1.319 | -4.4 |
| 14 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 2.753 | -3.124 | -2.243 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
| 15 | 1.109 | -1.259 | -2.238 | 2.51 | -3.124 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -2.243 | -4.4 | -4.4 | -4.4 | -4.4 |
| 16 | 1.027 | -2.02 | -2.644 | -2.279 | -1.259 | -4.4 | -4.4 | -4.4 | -2.238 | -4.4 | -4.4 | -4.4 | 2.386 | -2.62 | -2.67 | 0.35 |
| 17 | 2.399 | -0.764 | 0.769 | -0.868 | -2.006 | -4.4 | -3.174 | -3.185 | -2.308 | -3.199 | -4.4 | -4.4 | 0.147 | -4.4 | -1.013 | -4.4 |
| 18 | 0.727 | 1.399 | 1.766 | -0.814 | -1.656 | -1.355 | -3.211 | -3.167 | -0.795 | -0.108 | -0.054 | -1.279 | -4.4 | -2.256 | -1.031 | -4.4 |
| 19 | -0.164 | -0.944 | 0.173 | -1.215 | 0.849 | -0.31 | -1.153 | 0.655 | 1.252 | 0.257 | 0.574 | -0.476 | -1.04 | -4.4 | -1.007 | -3.106 |
| 20 | 0.749 | -0.392 | 0.703 | 0.8 | 0.422 | -0.785 | -1.339 | -1.691 | 0.667 | -0.422 | -0.263 | -1.298 | -3.135 | -1.516 | 0.834 | -1.132 |
| 21 | -0.095 | -0.083 | 0.026 | 1.021 | -0.235 | -0.884 | -1.668 | -0.486 | 0.955 | -0.022 | 0.045 | -0.315 | -2.197 | 0.819 | -1.239 | -1.088 |
| 22 | 0.9 | -0.064 | -0.414 | -1.043 | 0.346 | -0.762 | -1.12 | 0.864 | -0.461 | 0.104 | -0.633 | -1.274 | -0.836 | 0.868 | 0.089 | -0.597 |