Model info
| Transcription factor | GATA3 | ||||||||
| Model | GATA3_HUMAN.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | C | ||||||||
| Consensus | dvAGATARvRd | ||||||||
| wAUC | 0.7380913809523237 | ||||||||
| Best AUC | 0.7788252654226355 | ||||||||
| Benchmark datasets | 7 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers{2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors{2.2.1.1} | ||||||||
| HGNC | 4172 | ||||||||
| EntrezGene | 2625 | ||||||||
| UniProt ID | GATA3_HUMAN | ||||||||
| UniProt AC | P23771 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 206.607 | 49.735 | 79.487 | 164.172 |
| 02 | 117.127 | 159.065 | 169.302 | 54.506 |
| 03 | 365.318 | 6.09 | 2.97 | 125.623 |
| 04 | 1.916 | 0.938 | 497.147 | 0.0 |
| 05 | 496.112 | 1.95 | 0.0 | 1.938 |
| 06 | 6.933 | 4.06 | 0.994 | 488.013 |
| 07 | 442.947 | 2.871 | 7.967 | 46.215 |
| 08 | 397.701 | 27.329 | 48.446 | 26.524 |
| 09 | 166.58 | 115.064 | 169.899 | 48.457 |
| 10 | 295.533 | 59.246 | 102.026 | 43.195 |
| 11 | 212.47 | 42.606 | 47.777 | 197.147 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.498 | -0.903 | -0.446 | 0.27 |
| 02 | -0.064 | 0.238 | 0.3 | -0.814 |
| 03 | 1.064 | -2.807 | -3.331 | 0.005 |
| 04 | -3.597 | -3.928 | 1.371 | -4.4 |
| 05 | 1.369 | -3.587 | -4.4 | -3.59 |
| 06 | -2.702 | -3.115 | -3.906 | 1.353 |
| 07 | 1.256 | -3.353 | -2.587 | -0.974 |
| 08 | 1.149 | -1.477 | -0.929 | -1.506 |
| 09 | 0.284 | -0.082 | 0.304 | -0.928 |
| 10 | 0.853 | -0.733 | -0.2 | -1.04 |
| 11 | 0.525 | -1.053 | -0.942 | 0.451 |