Model info
| Transcription factor | GATA3 | ||||||||
| Model | GATA3_HUMAN.H10DI.B | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 23 | ||||||||
| Quality | B | ||||||||
| Consensus | nhdnndndndvAGATARvRdnnn | ||||||||
| wAUC | 0.7709995172723013 | ||||||||
| Best AUC | 0.8071799913872001 | ||||||||
| Benchmark datasets | 7 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers{2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors{2.2.1.1} | ||||||||
| HGNC | 4172 | ||||||||
| EntrezGene | 2625 | ||||||||
| UniProt ID | GATA3_HUMAN | ||||||||
| UniProt AC | P23771 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 59.443 | 16.661 | 29.643 | 67.204 | 35.548 | 13.374 | 6.704 | 31.245 | 85.152 | 10.976 | 13.144 | 10.87 | 24.237 | 34.02 | 22.27 | 39.511 |
| 02 | 66.548 | 17.774 | 42.473 | 77.584 | 33.287 | 10.095 | 2.941 | 28.708 | 45.861 | 1.993 | 8.339 | 15.568 | 26.079 | 22.88 | 43.269 | 56.601 |
| 03 | 46.358 | 32.88 | 44.03 | 48.507 | 27.232 | 8.695 | 4.089 | 12.726 | 48.809 | 4.878 | 20.284 | 23.052 | 25.485 | 33.49 | 62.513 | 56.973 |
| 04 | 31.552 | 11.227 | 59.868 | 45.237 | 28.734 | 27.084 | 0.0 | 24.125 | 52.853 | 26.947 | 26.629 | 24.489 | 12.9 | 20.418 | 47.841 | 60.099 |
| 05 | 35.031 | 7.679 | 27.684 | 55.644 | 51.541 | 9.206 | 4.128 | 20.8 | 58.078 | 33.31 | 6.99 | 35.959 | 37.31 | 19.38 | 38.471 | 58.787 |
| 06 | 38.497 | 42.121 | 47.409 | 53.933 | 28.879 | 18.278 | 1.038 | 21.381 | 29.577 | 14.712 | 15.114 | 17.871 | 21.177 | 51.379 | 38.991 | 59.643 |
| 07 | 49.258 | 11.261 | 30.379 | 27.232 | 76.331 | 25.325 | 3.158 | 21.674 | 41.451 | 17.516 | 23.502 | 20.083 | 35.247 | 24.142 | 51.462 | 41.977 |
| 08 | 75.278 | 25.407 | 57.143 | 44.46 | 27.16 | 28.329 | 0.0 | 22.756 | 40.204 | 31.227 | 20.946 | 16.124 | 11.181 | 37.497 | 20.117 | 42.172 |
| 09 | 53.777 | 10.816 | 26.629 | 62.6 | 72.585 | 14.499 | 3.823 | 31.553 | 40.505 | 14.208 | 21.225 | 22.268 | 28.923 | 21.199 | 36.584 | 38.805 |
| 10 | 48.428 | 35.149 | 83.134 | 29.079 | 29.354 | 24.189 | 5.215 | 1.965 | 19.208 | 28.54 | 26.521 | 13.991 | 19.764 | 58.217 | 59.212 | 18.033 |
| 11 | 87.079 | 1.919 | 0.97 | 26.786 | 89.181 | 0.0 | 0.0 | 56.915 | 126.799 | 4.227 | 0.0 | 43.056 | 46.938 | 0.0 | 0.938 | 15.193 |
| 12 | 0.0 | 0.0 | 348.978 | 1.019 | 0.0 | 0.0 | 6.146 | 0.0 | 0.0 | 0.0 | 1.908 | 0.0 | 0.0 | 0.0 | 141.95 | 0.0 |
| 13 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 495.081 | 1.021 | 0.0 | 2.879 | 1.019 | 0.0 | 0.0 | 0.0 |
| 14 | 0.954 | 1.967 | 0.994 | 492.186 | 0.0 | 0.0 | 0.0 | 1.021 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.879 |
| 15 | 0.954 | 0.0 | 0.0 | 0.0 | 1.967 | 0.0 | 0.0 | 0.0 | 0.994 | 0.0 | 0.0 | 0.0 | 434.424 | 6.843 | 8.912 | 45.906 |
| 16 | 317.001 | 33.524 | 61.223 | 26.591 | 4.929 | 1.914 | 0.0 | 0.0 | 5.939 | 0.984 | 0.0 | 1.989 | 39.703 | 1.947 | 3.14 | 1.115 |
| 17 | 131.28 | 72.72 | 121.46 | 42.112 | 5.847 | 23.508 | 3.3 | 5.715 | 13.113 | 27.717 | 18.387 | 5.145 | 2.855 | 13.958 | 9.883 | 3.0 |
| 18 | 94.882 | 7.595 | 42.6 | 8.019 | 101.465 | 13.964 | 4.874 | 17.6 | 80.444 | 27.837 | 38.928 | 5.821 | 23.488 | 8.072 | 16.516 | 7.896 |
| 19 | 97.033 | 19.136 | 40.691 | 143.419 | 36.593 | 6.923 | 0.949 | 13.003 | 43.193 | 16.222 | 15.444 | 28.059 | 13.505 | 7.919 | 8.754 | 9.158 |
| 20 | 45.58 | 12.235 | 40.04 | 92.468 | 37.134 | 5.054 | 1.104 | 6.908 | 33.307 | 9.852 | 5.964 | 16.714 | 31.721 | 123.394 | 19.728 | 18.796 |
| 21 | 49.808 | 16.817 | 35.94 | 45.178 | 51.252 | 12.328 | 2.967 | 83.988 | 27.069 | 9.056 | 17.769 | 12.942 | 12.284 | 82.524 | 19.438 | 20.64 |
| 22 | 39.941 | 33.597 | 23.546 | 43.329 | 49.547 | 9.566 | 0.943 | 60.669 | 29.955 | 15.105 | 16.333 | 14.721 | 30.036 | 50.117 | 48.989 | 33.605 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 0.637 | -0.618 | -0.052 | 0.759 | 0.127 | -0.832 | -1.495 | -0.0 | 0.995 | -1.024 | -0.849 | -1.033 | -0.251 | 0.084 | -0.334 | 0.232 |
| 02 | 0.749 | -0.555 | 0.304 | 0.902 | 0.062 | -1.105 | -2.251 | -0.084 | 0.38 | -2.587 | -1.288 | -0.685 | -0.178 | -0.307 | 0.322 | 0.588 |
| 03 | 0.39 | 0.05 | 0.339 | 0.435 | -0.136 | -1.248 | -1.955 | -0.881 | 0.441 | -1.793 | -0.426 | -0.3 | -0.201 | 0.068 | 0.687 | 0.595 |
| 04 | 0.009 | -1.002 | 0.644 | 0.366 | -0.083 | -0.141 | -4.4 | -0.255 | 0.52 | -0.146 | -0.158 | -0.24 | -0.867 | -0.419 | 0.422 | 0.648 |
| 05 | 0.113 | -1.367 | -0.12 | 0.572 | 0.496 | -1.193 | -1.947 | -0.401 | 0.614 | 0.063 | -1.456 | 0.139 | 0.175 | -0.47 | 0.206 | 0.626 |
| 06 | 0.206 | 0.295 | 0.413 | 0.541 | -0.078 | -0.528 | -3.099 | -0.374 | -0.054 | -0.74 | -0.713 | -0.55 | -0.383 | 0.492 | 0.219 | 0.641 |
| 07 | 0.451 | -0.999 | -0.028 | -0.136 | 0.886 | -0.207 | -2.188 | -0.36 | 0.279 | -0.569 | -0.281 | -0.435 | 0.119 | -0.254 | 0.494 | 0.292 |
| 08 | 0.872 | -0.204 | 0.598 | 0.349 | -0.138 | -0.097 | -4.4 | -0.313 | 0.249 | -0.001 | -0.394 | -0.65 | -1.006 | 0.18 | -0.434 | 0.297 |
| 09 | 0.538 | -1.038 | -0.158 | 0.689 | 0.836 | -0.754 | -2.017 | 0.01 | 0.257 | -0.774 | -0.381 | -0.334 | -0.076 | -0.382 | 0.156 | 0.214 |
| 10 | 0.434 | 0.116 | 0.971 | -0.071 | -0.062 | -0.253 | -1.731 | -2.598 | -0.479 | -0.09 | -0.162 | -0.789 | -0.451 | 0.616 | 0.633 | -0.541 |
| 11 | 1.017 | -2.618 | -3.148 | -0.152 | 1.041 | -4.4 | -4.4 | 0.594 | 1.391 | -1.925 | -4.4 | 0.317 | 0.403 | -4.4 | -3.172 | -0.708 |
| 12 | -4.4 | -4.4 | 2.402 | -3.113 | -4.4 | -4.4 | -1.577 | -4.4 | -4.4 | -4.4 | -2.623 | -4.4 | -4.4 | -4.4 | 1.504 | -4.4 |
| 13 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 2.751 | -3.111 | -4.4 | -2.27 | -3.113 | -4.4 | -4.4 | -4.4 |
| 14 | -3.16 | -2.598 | -3.131 | 2.745 | -4.4 | -4.4 | -4.4 | -3.111 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -2.27 |
| 15 | -3.16 | -4.4 | -4.4 | -4.4 | -2.598 | -4.4 | -4.4 | -4.4 | -3.131 | -4.4 | -4.4 | -4.4 | 2.621 | -1.476 | -1.224 | 0.381 |
| 16 | 2.306 | 0.069 | 0.666 | -0.159 | -1.783 | -2.62 | -4.4 | -4.4 | -1.61 | -3.138 | -4.4 | -2.588 | 0.237 | -2.606 | -2.193 | -3.046 |
| 17 | 1.426 | 0.838 | 1.348 | 0.295 | -1.624 | -0.281 | -2.149 | -1.646 | -0.852 | -0.118 | -0.522 | -1.744 | -2.278 | -0.791 | -1.125 | -2.234 |
| 18 | 1.102 | -1.377 | 0.307 | -1.325 | 1.169 | -0.79 | -1.794 | -0.565 | 0.938 | -0.114 | 0.217 | -1.628 | -0.281 | -1.319 | -0.627 | -1.34 |
| 19 | 1.125 | -0.483 | 0.261 | 1.514 | 0.156 | -1.465 | -3.164 | -0.86 | 0.32 | -0.644 | -0.692 | -0.106 | -0.823 | -1.337 | -1.241 | -1.198 |
| 20 | 0.374 | -0.919 | 0.245 | 1.077 | 0.171 | -1.76 | -3.054 | -1.467 | 0.063 | -1.128 | -1.605 | -0.615 | 0.015 | 1.364 | -0.453 | -0.5 |
| 21 | 0.462 | -0.609 | 0.138 | 0.365 | 0.49 | -0.911 | -2.244 | 0.981 | -0.142 | -1.209 | -0.555 | -0.864 | -0.915 | 0.963 | -0.467 | -0.409 |
| 22 | 0.243 | 0.072 | -0.279 | 0.323 | 0.456 | -1.156 | -3.168 | 0.657 | -0.042 | -0.714 | -0.638 | -0.739 | -0.039 | 0.468 | 0.445 | 0.072 |