Model info
| Transcription factor | Gata2 | ||||||||
| Model | GATA2_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Consensus | vvWGATAASvn | ||||||||
| wAUC | 0.8357221523117732 | ||||||||
| Best AUC | 0.8853869410431214 | ||||||||
| Benchmark datasets | 5 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers{2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors{2.2.1.1} | ||||||||
| MGI | 95662 | ||||||||
| EntrezGene | 14461 | ||||||||
| UniProt ID | GATA2_MOUSE | ||||||||
| UniProt AC | O09100 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 161.312 | 71.246 | 199.195 | 68.247 |
| 02 | 73.729 | 207.625 | 167.099 | 51.548 |
| 03 | 326.598 | 11.116 | 5.841 | 156.444 |
| 04 | 3.001 | 0.923 | 495.147 | 0.929 |
| 05 | 498.096 | 0.0 | 1.025 | 0.88 |
| 06 | 0.88 | 2.906 | 5.325 | 490.889 |
| 07 | 481.187 | 4.85 | 2.685 | 11.278 |
| 08 | 427.007 | 6.757 | 50.527 | 15.708 |
| 09 | 53.748 | 129.539 | 289.599 | 27.114 |
| 10 | 203.866 | 95.236 | 169.435 | 31.463 |
| 11 | 184.02 | 98.552 | 124.82 | 92.608 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.252 | -0.553 | 0.461 | -0.595 |
| 02 | -0.519 | 0.503 | 0.287 | -0.868 |
| 03 | 0.953 | -2.301 | -2.84 | 0.222 |
| 04 | -3.324 | -3.934 | 1.367 | -3.931 |
| 05 | 1.373 | -4.4 | -3.894 | -3.951 |
| 06 | -3.951 | -3.346 | -2.912 | 1.359 |
| 07 | 1.339 | -2.984 | -3.396 | -2.289 |
| 08 | 1.22 | -2.723 | -0.888 | -1.992 |
| 09 | -0.828 | 0.035 | 0.833 | -1.485 |
| 10 | 0.484 | -0.268 | 0.301 | -1.344 |
| 11 | 0.383 | -0.234 | -0.001 | -0.296 |