Model info
| Transcription factor | GATA2 | ||||||||
| Model | GATA2_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Consensus | vvAGATAASvv | ||||||||
| wAUC | 0.8486763488671389 | ||||||||
| Best AUC | 0.9097708716040691 | ||||||||
| Benchmark datasets | 10 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | GATA-type zinc fingers{2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors{2.2.1.1} | ||||||||
| HGNC | 4171 | ||||||||
| EntrezGene | 2624 | ||||||||
| UniProt ID | GATA2_HUMAN | ||||||||
| UniProt AC | P23769 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 166.166 | 74.732 | 189.852 | 69.25 |
| 02 | 65.238 | 192.094 | 215.927 | 26.742 |
| 03 | 364.661 | 13.654 | 2.948 | 118.738 |
| 04 | 1.28 | 0.78 | 497.94 | 0.0 |
| 05 | 498.041 | 0.0 | 0.875 | 1.083 |
| 06 | 7.713 | 0.0 | 0.865 | 491.422 |
| 07 | 473.268 | 6.384 | 1.915 | 18.433 |
| 08 | 429.243 | 5.812 | 50.03 | 14.914 |
| 09 | 61.558 | 78.836 | 329.723 | 29.883 |
| 10 | 177.82 | 110.293 | 194.347 | 17.54 |
| 11 | 190.692 | 120.109 | 122.416 | 66.782 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.282 | -0.506 | 0.414 | -0.581 |
| 02 | -0.639 | 0.425 | 0.541 | -1.498 |
| 03 | 1.063 | -2.119 | -3.336 | -0.051 |
| 04 | -3.799 | -3.993 | 1.373 | -4.4 |
| 05 | 1.373 | -4.4 | -3.953 | -3.871 |
| 06 | -2.614 | -4.4 | -3.958 | 1.36 |
| 07 | 1.322 | -2.769 | -3.597 | -1.846 |
| 08 | 1.225 | -2.844 | -0.897 | -2.039 |
| 09 | -0.696 | -0.454 | 0.962 | -1.393 |
| 10 | 0.349 | -0.124 | 0.437 | -1.891 |
| 11 | 0.418 | -0.039 | -0.021 | -0.616 |