Model info
| Transcription factor | GATA2 | ||||||||
| Model | GATA2_HUMAN.H10DI.A | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 23 | ||||||||
| Quality | A | ||||||||
| Consensus | nnnnndbnnnnnnvWGATAASvn | ||||||||
| wAUC | 0.8679724107879996 | ||||||||
| Best AUC | 0.9319908239925065 | ||||||||
| Benchmark datasets | 10 | ||||||||
| Aligned words | 505 | ||||||||
| TF family | GATA-type zinc fingers{2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors{2.2.1.1} | ||||||||
| HGNC | 4171 | ||||||||
| EntrezGene | 2624 | ||||||||
| UniProt ID | GATA2_HUMAN | ||||||||
| UniProt AC | P23769 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 21.145 | 15.351 | 53.373 | 7.906 | 56.798 | 44.225 | 15.941 | 42.983 | 25.351 | 36.575 | 58.23 | 22.337 | 11.266 | 27.434 | 35.157 | 19.959 |
| 02 | 31.809 | 14.97 | 54.566 | 13.215 | 51.753 | 29.988 | 7.855 | 33.989 | 33.143 | 58.692 | 47.469 | 23.397 | 12.256 | 25.174 | 41.976 | 13.778 |
| 03 | 10.199 | 26.003 | 72.775 | 19.985 | 31.845 | 52.057 | 7.289 | 37.632 | 36.315 | 56.023 | 33.396 | 26.133 | 5.472 | 36.15 | 29.72 | 13.037 |
| 04 | 10.994 | 19.573 | 29.681 | 23.581 | 19.447 | 32.064 | 7.749 | 110.974 | 43.907 | 39.23 | 32.466 | 27.578 | 8.225 | 21.983 | 45.917 | 20.661 |
| 05 | 14.492 | 7.321 | 22.007 | 38.753 | 23.964 | 12.086 | 5.66 | 71.14 | 30.411 | 19.041 | 45.189 | 21.171 | 9.944 | 14.976 | 137.461 | 20.414 |
| 06 | 6.131 | 8.865 | 48.281 | 15.534 | 15.622 | 13.038 | 5.758 | 19.006 | 36.812 | 40.645 | 79.034 | 53.826 | 6.44 | 13.003 | 116.182 | 15.854 |
| 07 | 13.809 | 2.472 | 40.233 | 8.491 | 20.752 | 24.267 | 8.657 | 21.876 | 66.152 | 58.876 | 90.012 | 34.215 | 14.994 | 15.381 | 49.703 | 24.142 |
| 08 | 24.228 | 9.602 | 44.423 | 37.455 | 29.381 | 36.384 | 11.286 | 23.945 | 52.025 | 53.225 | 53.712 | 29.642 | 7.361 | 22.812 | 40.822 | 17.728 |
| 09 | 22.478 | 17.259 | 43.6 | 29.658 | 49.667 | 36.394 | 3.14 | 32.822 | 47.297 | 34.423 | 49.941 | 18.583 | 8.869 | 26.042 | 54.602 | 19.256 |
| 10 | 34.292 | 11.784 | 58.057 | 24.177 | 34.686 | 30.183 | 6.042 | 43.206 | 42.542 | 28.048 | 62.934 | 17.76 | 14.605 | 27.714 | 46.57 | 11.43 |
| 11 | 15.617 | 33.117 | 53.883 | 23.51 | 29.747 | 33.42 | 3.876 | 30.686 | 32.081 | 54.87 | 53.368 | 33.284 | 5.076 | 26.964 | 40.727 | 23.807 |
| 12 | 15.581 | 14.469 | 43.436 | 9.035 | 67.058 | 32.616 | 18.809 | 29.888 | 43.04 | 34.729 | 54.926 | 19.157 | 19.412 | 8.937 | 59.946 | 22.991 |
| 13 | 26.416 | 45.629 | 66.05 | 6.996 | 19.504 | 45.415 | 15.232 | 10.601 | 28.878 | 55.961 | 71.238 | 21.04 | 7.895 | 27.227 | 38.866 | 7.082 |
| 14 | 63.502 | 2.532 | 1.621 | 15.038 | 105.442 | 5.254 | 1.902 | 61.634 | 151.76 | 7.765 | 1.65 | 30.212 | 36.236 | 1.84 | 0.738 | 6.905 |
| 15 | 0.0 | 0.0 | 356.94 | 0.0 | 0.0 | 0.0 | 17.391 | 0.0 | 0.0 | 0.0 | 5.91 | 0.0 | 0.0 | 0.0 | 113.789 | 0.0 |
| 16 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 492.446 | 0.785 | 0.799 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| 17 | 4.343 | 5.645 | 0.924 | 481.534 | 0.0 | 0.0 | 0.0 | 0.785 | 0.0 | 0.0 | 0.799 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| 18 | 4.343 | 0.0 | 0.0 | 0.0 | 4.898 | 0.747 | 0.0 | 0.0 | 1.723 | 0.0 | 0.0 | 0.0 | 455.839 | 0.0 | 10.659 | 15.821 |
| 19 | 388.369 | 4.808 | 64.874 | 8.753 | 0.747 | 0.0 | 0.0 | 0.0 | 6.066 | 1.149 | 3.445 | 0.0 | 14.33 | 0.0 | 1.491 | 0.0 |
| 20 | 40.435 | 102.936 | 244.93 | 21.21 | 0.904 | 1.149 | 1.883 | 2.021 | 10.313 | 19.869 | 34.203 | 5.425 | 0.928 | 0.852 | 6.973 | 0.0 |
| 21 | 16.522 | 7.282 | 25.847 | 2.929 | 63.38 | 36.152 | 17.427 | 7.847 | 96.609 | 72.377 | 112.752 | 6.252 | 4.925 | 2.764 | 20.05 | 0.916 |
| 22 | 49.099 | 30.597 | 71.047 | 30.691 | 50.11 | 27.779 | 12.253 | 28.432 | 59.074 | 35.964 | 58.878 | 22.16 | 4.952 | 1.92 | 9.276 | 1.796 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -0.373 | -0.686 | 0.542 | -1.327 | 0.604 | 0.356 | -0.65 | 0.327 | -0.194 | 0.167 | 0.629 | -0.319 | -0.987 | -0.117 | 0.128 | -0.43 |
| 02 | 0.029 | -0.711 | 0.564 | -0.832 | 0.511 | -0.029 | -1.333 | 0.095 | 0.07 | 0.636 | 0.426 | -0.273 | -0.905 | -0.201 | 0.304 | -0.792 |
| 03 | -1.083 | -0.169 | 0.85 | -0.428 | 0.03 | 0.517 | -1.404 | 0.196 | 0.16 | 0.59 | 0.077 | -0.165 | -1.674 | 0.156 | -0.038 | -0.845 |
| 04 | -1.01 | -0.449 | -0.039 | -0.266 | -0.455 | 0.037 | -1.346 | 1.27 | 0.348 | 0.237 | 0.05 | -0.111 | -1.289 | -0.335 | 0.393 | -0.396 |
| 05 | -0.742 | -1.4 | -0.334 | 0.225 | -0.25 | -0.919 | -1.643 | 0.828 | -0.015 | -0.476 | 0.377 | -0.372 | -1.107 | -0.71 | 1.484 | -0.407 |
| 06 | -1.568 | -1.218 | 0.443 | -0.675 | -0.669 | -0.845 | -1.627 | -0.478 | 0.174 | 0.272 | 0.932 | 0.55 | -1.522 | -0.848 | 1.316 | -0.655 |
| 07 | -0.789 | -2.392 | 0.262 | -1.259 | -0.391 | -0.238 | -1.24 | -0.34 | 0.755 | 0.64 | 1.062 | 0.101 | -0.709 | -0.684 | 0.471 | -0.243 |
| 08 | -0.239 | -1.141 | 0.36 | 0.191 | -0.049 | 0.162 | -0.985 | -0.251 | 0.517 | 0.539 | 0.548 | -0.04 | -1.395 | -0.298 | 0.276 | -0.546 |
| 09 | -0.313 | -0.572 | 0.341 | -0.04 | 0.471 | 0.163 | -2.182 | 0.06 | 0.422 | 0.107 | 0.476 | -0.5 | -1.217 | -0.168 | 0.565 | -0.465 |
| 10 | 0.104 | -0.943 | 0.626 | -0.241 | 0.115 | -0.022 | -1.582 | 0.332 | 0.317 | -0.095 | 0.706 | -0.544 | -0.735 | -0.107 | 0.407 | -0.973 |
| 11 | -0.67 | 0.069 | 0.551 | -0.269 | -0.037 | 0.078 | -1.992 | -0.006 | 0.038 | 0.57 | 0.542 | 0.074 | -1.744 | -0.134 | 0.274 | -0.256 |
| 12 | -0.672 | -0.744 | 0.338 | -1.199 | 0.769 | 0.054 | -0.488 | -0.032 | 0.329 | 0.116 | 0.571 | -0.47 | -0.457 | -1.21 | 0.657 | -0.291 |
| 13 | -0.154 | 0.387 | 0.754 | -1.443 | -0.452 | 0.382 | -0.694 | -1.046 | -0.066 | 0.589 | 0.829 | -0.378 | -1.328 | -0.124 | 0.228 | -1.432 |
| 14 | 0.715 | -2.371 | -2.745 | -0.706 | 1.219 | -1.712 | -2.614 | 0.685 | 1.582 | -1.344 | -2.731 | -0.022 | 0.158 | -2.641 | -3.324 | -1.456 |
| 15 | -4.39 | -4.39 | 2.436 | -4.39 | -4.39 | -4.39 | -0.564 | -4.39 | -4.39 | -4.39 | -1.602 | -4.39 | -4.39 | -4.39 | 1.295 | -4.39 |
| 16 | -4.39 | -4.39 | -4.39 | -4.39 | -4.39 | -4.39 | -4.39 | -4.39 | 2.758 | -3.283 | -3.271 | -4.39 | -4.39 | -4.39 | -4.39 | -4.39 |
| 17 | -1.888 | -1.645 | -3.171 | 2.735 | -4.39 | -4.39 | -4.39 | -3.283 | -4.39 | -4.39 | -3.271 | -4.39 | -4.39 | -4.39 | -4.39 | -4.39 |
| 18 | -1.888 | -4.39 | -4.39 | -4.39 | -1.777 | -3.316 | -4.39 | -4.39 | -2.695 | -4.39 | -4.39 | -4.39 | 2.681 | -4.39 | -1.04 | -0.657 |
| 19 | 2.52 | -1.795 | 0.736 | -1.23 | -3.316 | -4.39 | -4.39 | -4.39 | -1.578 | -3.013 | -2.099 | -4.39 | -0.753 | -4.39 | -2.812 | -4.39 |
| 20 | 0.267 | 1.195 | 2.06 | -0.37 | -3.187 | -3.013 | -2.622 | -2.564 | -1.072 | -0.434 | 0.101 | -1.683 | -3.168 | -3.227 | -1.446 | -4.39 |
| 21 | -0.615 | -1.405 | -0.175 | -2.243 | 0.713 | 0.156 | -0.562 | -1.334 | 1.132 | 0.845 | 1.286 | -1.549 | -1.772 | -2.295 | -0.425 | -3.177 |
| 22 | 0.459 | -0.009 | 0.826 | -0.006 | 0.479 | -0.104 | -0.906 | -0.081 | 0.643 | 0.151 | 0.64 | -0.327 | -1.767 | -2.606 | -1.174 | -2.661 |