Model info
| Transcription factor | Gata1 | ||||||||
| Model | GATA1_MOUSE.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Consensus | nvAGATAASvn | ||||||||
| wAUC | 0.8677528789590304 | ||||||||
| Best AUC | 0.9101870554711257 | ||||||||
| Benchmark datasets | 13 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | GATA-type zinc fingers{2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors{2.2.1.1} | ||||||||
| MGI | 95661 | ||||||||
| EntrezGene | 14460 | ||||||||
| UniProt ID | GATA1_MOUSE | ||||||||
| UniProt AC | P17679 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 145.217 | 82.81 | 184.131 | 87.842 |
| 02 | 57.668 | 240.047 | 149.708 | 52.577 |
| 03 | 368.768 | 11.089 | 0.972 | 119.17 |
| 04 | 0.0 | 0.873 | 499.127 | 0.0 |
| 05 | 500.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 1.056 | 498.944 |
| 07 | 478.995 | 0.975 | 1.068 | 18.962 |
| 08 | 435.971 | 11.377 | 49.539 | 3.113 |
| 09 | 71.986 | 73.501 | 314.792 | 39.721 |
| 10 | 186.781 | 102.058 | 184.138 | 27.023 |
| 11 | 157.797 | 118.749 | 153.512 | 69.942 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.148 | -0.406 | 0.383 | -0.348 |
| 02 | -0.759 | 0.647 | 0.178 | -0.849 |
| 03 | 1.074 | -2.304 | -3.914 | -0.047 |
| 04 | -4.4 | -3.954 | 1.375 | -4.4 |
| 05 | 1.377 | -4.4 | -4.4 | -4.4 |
| 06 | -4.4 | -4.4 | -3.881 | 1.375 |
| 07 | 1.334 | -3.913 | -3.877 | -1.819 |
| 08 | 1.24 | -2.281 | -0.907 | -3.3 |
| 09 | -0.543 | -0.522 | 0.916 | -1.12 |
| 10 | 0.398 | -0.2 | 0.383 | -1.488 |
| 11 | 0.23 | -0.051 | 0.203 | -0.571 |