Model info
| Transcription factor | Gata1 | ||||||||
| Model | GATA1_MOUSE.H10DI.A | ||||||||
| Model type | Dinucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | ChIP-Seq | ||||||||
| Model length | 21 | ||||||||
| Quality | A | ||||||||
| Consensus | nnbnnnnnndbWGATAASvnn | ||||||||
| wAUC | 0.8852083950439796 | ||||||||
| Best AUC | 0.9304282739217927 | ||||||||
| Benchmark datasets | 13 | ||||||||
| Aligned words | 515 | ||||||||
| TF family | GATA-type zinc fingers{2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors{2.2.1.1} | ||||||||
| MGI | 95661 | ||||||||
| EntrezGene | 14460 | ||||||||
| UniProt ID | GATA1_MOUSE | ||||||||
| UniProt AC | P17679 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | 29.85 | 14.655 | 34.822 | 23.381 | 22.845 | 19.118 | 3.977 | 84.696 | 24.116 | 25.319 | 28.376 | 45.819 | 14.875 | 23.949 | 68.714 | 34.207 |
| 02 | 21.734 | 15.233 | 38.828 | 15.891 | 15.611 | 17.421 | 2.091 | 47.918 | 21.436 | 31.179 | 43.285 | 39.988 | 8.51 | 19.198 | 126.639 | 33.756 |
| 03 | 11.742 | 13.252 | 37.353 | 4.944 | 40.847 | 16.153 | 6.08 | 19.952 | 34.967 | 66.076 | 52.626 | 57.174 | 8.695 | 22.523 | 83.631 | 22.704 |
| 04 | 17.941 | 9.211 | 53.185 | 15.913 | 46.792 | 24.15 | 5.009 | 42.053 | 27.551 | 22.82 | 77.704 | 51.615 | 7.033 | 26.293 | 47.835 | 23.612 |
| 05 | 14.138 | 20.313 | 40.896 | 23.97 | 19.331 | 33.585 | 4.962 | 24.595 | 47.417 | 45.947 | 59.915 | 30.455 | 21.291 | 23.506 | 61.223 | 27.173 |
| 06 | 16.095 | 21.127 | 53.251 | 11.705 | 43.952 | 38.519 | 7.05 | 33.83 | 40.704 | 36.208 | 70.249 | 19.835 | 9.761 | 30.528 | 48.223 | 17.682 |
| 07 | 30.676 | 12.082 | 59.052 | 8.701 | 44.847 | 39.981 | 8.793 | 32.759 | 38.932 | 40.049 | 65.97 | 33.822 | 8.843 | 21.795 | 36.019 | 16.395 |
| 08 | 45.323 | 20.688 | 40.933 | 16.354 | 31.794 | 30.498 | 2.922 | 48.694 | 48.151 | 42.751 | 49.866 | 29.066 | 13.665 | 20.36 | 38.67 | 18.983 |
| 09 | 45.199 | 11.409 | 62.479 | 19.847 | 53.961 | 24.367 | 8.304 | 27.665 | 29.256 | 20.252 | 57.872 | 25.012 | 31.895 | 21.251 | 46.283 | 13.668 |
| 10 | 18.48 | 62.539 | 58.557 | 20.733 | 19.06 | 31.006 | 2.973 | 24.239 | 21.299 | 76.281 | 60.711 | 16.647 | 10.038 | 32.646 | 29.587 | 13.921 |
| 11 | 55.926 | 0.0 | 1.897 | 11.055 | 113.849 | 0.0 | 0.0 | 88.624 | 123.046 | 2.367 | 1.942 | 24.473 | 52.864 | 3.8 | 0.0 | 18.876 |
| 12 | 0.0 | 0.0 | 345.684 | 0.0 | 0.0 | 0.0 | 6.167 | 0.0 | 0.0 | 0.0 | 3.839 | 0.0 | 0.0 | 0.0 | 143.029 | 0.0 |
| 13 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 497.746 | 0.972 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| 14 | 0.997 | 0.0 | 3.171 | 493.578 | 0.0 | 0.0 | 0.0 | 0.972 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| 15 | 0.997 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.171 | 0.0 | 0.0 | 0.0 | 478.297 | 1.146 | 2.133 | 12.975 |
| 16 | 412.65 | 5.415 | 54.789 | 9.611 | 0.0 | 0.0 | 0.0 | 1.146 | 2.133 | 0.0 | 0.0 | 0.0 | 12.975 | 0.0 | 0.0 | 0.0 |
| 17 | 57.497 | 99.853 | 257.119 | 13.288 | 3.368 | 1.036 | 1.011 | 0.0 | 4.145 | 17.779 | 25.886 | 6.978 | 0.0 | 1.908 | 8.85 | 0.0 |
| 18 | 20.776 | 15.636 | 25.588 | 3.01 | 68.513 | 29.89 | 6.879 | 15.294 | 106.982 | 61.252 | 117.669 | 6.963 | 9.101 | 0.993 | 10.173 | 0.0 |
| 19 | 67.9 | 42.229 | 73.395 | 21.847 | 58.396 | 20.074 | 9.285 | 20.016 | 52.423 | 27.433 | 47.592 | 32.86 | 2.898 | 9.721 | 8.903 | 3.745 |
| 20 | 42.036 | 50.702 | 62.944 | 25.936 | 40.004 | 23.761 | 0.0 | 35.692 | 40.528 | 39.654 | 37.955 | 21.039 | 12.875 | 18.658 | 27.04 | 19.896 |
PWM
| AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 01 | -0.043 | -0.741 | 0.109 | -0.283 | -0.306 | -0.481 | -1.978 | 0.992 | -0.253 | -0.205 | -0.093 | 0.381 | -0.726 | -0.26 | 0.784 | 0.092 |
| 02 | -0.355 | -0.703 | 0.217 | -0.662 | -0.679 | -0.572 | -2.544 | 0.426 | -0.369 | 0.0 | 0.325 | 0.246 | -1.266 | -0.477 | 1.393 | 0.079 |
| 03 | -0.956 | -0.839 | 0.179 | -1.778 | 0.267 | -0.646 | -1.585 | -0.439 | 0.114 | 0.745 | 0.519 | 0.601 | -1.245 | -0.32 | 0.979 | -0.312 |
| 04 | -0.543 | -1.19 | 0.529 | -0.661 | 0.402 | -0.252 | -1.766 | 0.296 | -0.122 | -0.307 | 0.906 | 0.499 | -1.447 | -0.168 | 0.424 | -0.274 |
| 05 | -0.776 | -0.422 | 0.269 | -0.259 | -0.47 | 0.074 | -1.775 | -0.234 | 0.415 | 0.384 | 0.648 | -0.023 | -0.375 | -0.278 | 0.669 | -0.135 |
| 06 | -0.649 | -0.383 | 0.53 | -0.959 | 0.34 | 0.209 | -1.445 | 0.081 | 0.264 | 0.148 | 0.806 | -0.445 | -1.134 | -0.021 | 0.432 | -0.558 |
| 07 | -0.016 | -0.929 | 0.633 | -1.245 | 0.36 | 0.246 | -1.235 | 0.049 | 0.22 | 0.248 | 0.743 | 0.081 | -1.229 | -0.352 | 0.143 | -0.631 |
| 08 | 0.371 | -0.404 | 0.27 | -0.634 | 0.02 | -0.022 | -2.255 | 0.442 | 0.431 | 0.313 | 0.465 | -0.069 | -0.809 | -0.419 | 0.213 | -0.488 |
| 09 | 0.368 | -0.984 | 0.689 | -0.444 | 0.544 | -0.243 | -1.289 | -0.118 | -0.063 | -0.425 | 0.613 | -0.217 | 0.023 | -0.377 | 0.391 | -0.809 |
| 10 | -0.514 | 0.69 | 0.625 | -0.402 | -0.484 | -0.005 | -2.24 | -0.248 | -0.375 | 0.888 | 0.661 | -0.617 | -1.107 | 0.046 | -0.051 | -0.791 |
| 11 | 0.579 | -4.398 | -2.626 | -1.014 | 1.286 | -4.398 | -4.398 | 1.037 | 1.364 | -2.438 | -2.606 | -0.239 | 0.523 | -2.019 | -4.398 | -0.494 |
| 12 | -4.398 | -4.398 | 2.395 | -4.398 | -4.398 | -4.398 | -1.572 | -4.398 | -4.398 | -4.398 | -2.01 | -4.398 | -4.398 | -4.398 | 1.514 | -4.398 |
| 13 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | 2.759 | -3.144 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 |
| 14 | -3.126 | -4.398 | -2.182 | 2.751 | -4.398 | -4.398 | -4.398 | -3.144 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 |
| 15 | -3.126 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -4.398 | -2.182 | -4.398 | -4.398 | -4.398 | 2.719 | -3.024 | -2.527 | -0.859 |
| 16 | 2.572 | -1.693 | 0.559 | -1.149 | -4.398 | -4.398 | -4.398 | -3.024 | -2.527 | -4.398 | -4.398 | -4.398 | -0.859 | -4.398 | -4.398 | -4.398 |
| 17 | 0.607 | 1.156 | 2.099 | -0.836 | -2.128 | -3.098 | -3.116 | -4.398 | -1.94 | -0.552 | -0.183 | -1.455 | -4.398 | -2.621 | -1.229 | -4.398 |
| 18 | -0.399 | -0.678 | -0.195 | -2.229 | 0.781 | -0.041 | -1.468 | -0.699 | 1.224 | 0.669 | 1.319 | -1.457 | -1.202 | -3.129 | -1.095 | -4.398 |
| 19 | 0.772 | 0.3 | 0.849 | -0.35 | 0.622 | -0.433 | -1.182 | -0.436 | 0.515 | -0.126 | 0.419 | 0.052 | -2.262 | -1.138 | -1.223 | -2.033 |
| 20 | 0.296 | 0.482 | 0.697 | -0.181 | 0.247 | -0.268 | -4.398 | 0.134 | 0.26 | 0.238 | 0.195 | -0.387 | -0.867 | -0.505 | -0.14 | -0.442 |