Model info
| Transcription factor | GATA1 | ||||||||
| Model | GATA1_HUMAN.H10MO.S | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 10 | ||||||||
| Quality | S | ||||||||
| Consensus | dvAGATAASv | ||||||||
| wAUC | 0.8817230866611777 | ||||||||
| Best AUC | 0.9263322896063331 | ||||||||
| Benchmark datasets | 12 | ||||||||
| Aligned words | 974 | ||||||||
| TF family | GATA-type zinc fingers{2.2.1} | ||||||||
| TF subfamily | Two zinc-finger GATA factors{2.2.1.1} | ||||||||
| HGNC | 4170 | ||||||||
| EntrezGene | 2623 | ||||||||
| UniProt ID | GATA1_HUMAN | ||||||||
| UniProt AC | P15976 | ||||||||
| Comment | Secondary motif. | ||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 344.458 | 126.577 | 300.013 | 184.847 |
| 02 | 165.336 | 490.468 | 252.07 | 48.021 |
| 03 | 652.284 | 6.843 | 0.0 | 296.768 |
| 04 | 0.0 | 0.0 | 955.895 | 0.0 |
| 05 | 955.895 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 955.895 |
| 07 | 954.539 | 0.0 | 0.0 | 1.356 |
| 08 | 905.698 | 0.0 | 50.197 | 0.0 |
| 09 | 116.993 | 129.8 | 649.302 | 59.8 |
| 10 | 325.825 | 165.984 | 386.238 | 77.847 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.363 | -0.629 | 0.226 | -0.255 |
| 02 | -0.365 | 0.715 | 0.053 | -1.577 |
| 03 | 1.0 | -3.337 | -4.944 | 0.215 |
| 04 | -4.944 | -4.944 | 1.381 | -4.944 |
| 05 | 1.381 | -4.944 | -4.944 | -4.944 |
| 06 | -4.944 | -4.944 | -4.944 | 1.381 |
| 07 | 1.38 | -4.944 | -4.944 | -4.361 |
| 08 | 1.327 | -4.944 | -1.534 | -4.944 |
| 09 | -0.707 | -0.604 | 0.995 | -1.364 |
| 10 | 0.308 | -0.361 | 0.477 | -1.107 |