Model info
| Transcription factor | GABPA | ||||||||
| Model | GABPA_HUMAN.H10MO.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Consensus | vvvCCGGAAGYSv | ||||||||
| wAUC | 0.9075331433433343 | ||||||||
| Best AUC | 0.9510419004368058 | ||||||||
| Benchmark datasets | 14 | ||||||||
| Aligned words | 2926 | ||||||||
| TF family | Ets-related factors{3.5.2} | ||||||||
| TF subfamily | Ets-like factors{3.5.2.1} | ||||||||
| HGNC | 4071 | ||||||||
| EntrezGene | 2551 | ||||||||
| UniProt ID | GABPA_HUMAN | ||||||||
| UniProt AC | Q06546 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 615.257 | 697.07 | 1261.19 | 176.435 |
| 02 | 996.493 | 805.188 | 693.77 | 254.502 |
| 03 | 1106.989 | 508.194 | 1029.833 | 104.936 |
| 04 | 143.712 | 2086.428 | 518.375 | 1.437 |
| 05 | 362.954 | 2369.474 | 17.237 | 0.287 |
| 06 | 0.0 | 0.0 | 2749.953 | 0.0 |
| 07 | 0.0 | 0.0 | 2749.953 | 0.0 |
| 08 | 2748.257 | 1.696 | 0.0 | 0.0 |
| 09 | 2726.648 | 1.15 | 1.15 | 21.004 |
| 10 | 202.057 | 28.799 | 2518.809 | 0.287 |
| 11 | 172.929 | 521.124 | 106.382 | 1949.518 |
| 12 | 398.168 | 424.209 | 1706.402 | 221.173 |
| 13 | 764.259 | 675.088 | 1066.541 | 244.064 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.111 | 0.014 | 0.605 | -1.352 |
| 02 | 0.37 | 0.158 | 0.009 | -0.989 |
| 03 | 0.475 | -0.301 | 0.403 | -1.864 |
| 04 | -1.554 | 1.108 | -0.281 | -5.307 |
| 05 | -0.636 | 1.235 | -3.58 | -5.717 |
| 06 | -5.853 | -5.853 | 1.384 | -5.853 |
| 07 | -5.853 | -5.853 | 1.384 | -5.853 |
| 08 | 1.384 | -5.234 | -5.853 | -5.853 |
| 09 | 1.376 | -5.395 | -5.395 | -3.401 |
| 10 | -1.218 | -3.109 | 1.296 | -5.717 |
| 11 | -1.372 | -0.276 | -1.85 | 1.04 |
| 12 | -0.544 | -0.481 | 0.907 | -1.128 |
| 13 | 0.106 | -0.018 | 0.438 | -1.03 |