Model info
| Transcription factor | FOXG1 | ||||||||
| Model | FOXG1_HUMAN.H10MO.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HT-SELEX | ||||||||
| Model length | 17 | ||||||||
| Quality | D | ||||||||
| Consensus | dWTGTTTMYdWdTdKWb | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 306 | ||||||||
| TF family | Forkhead box (FOX) factors{3.3.1} | ||||||||
| TF subfamily | FOXG{3.3.1.7} | ||||||||
| HGNC | 3811 | ||||||||
| EntrezGene | 2290 | ||||||||
| UniProt ID | FOXG1_HUMAN | ||||||||
| UniProt AC | P55316 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 110.952 | 47.121 | 57.131 | 94.372 |
| 02 | 46.549 | 34.365 | 37.511 | 191.151 |
| 03 | 10.268 | 11.126 | 9.181 | 279.0 |
| 04 | 31.691 | 6.178 | 265.528 | 6.178 |
| 05 | 0.0 | 0.972 | 2.917 | 305.686 |
| 06 | 0.0 | 0.0 | 71.782 | 237.794 |
| 07 | 1.03 | 0.0 | 28.659 | 279.887 |
| 08 | 212.852 | 50.847 | 33.578 | 12.299 |
| 09 | 12.241 | 109.364 | 7.893 | 180.077 |
| 10 | 95.7 | 29.631 | 90.488 | 93.756 |
| 11 | 59.148 | 21.965 | 36.721 | 191.742 |
| 12 | 113.434 | 17.616 | 55.256 | 123.269 |
| 13 | 19.061 | 17.002 | 6.192 | 267.321 |
| 14 | 97.173 | 12.283 | 97.916 | 102.204 |
| 15 | 15.186 | 23.137 | 27.313 | 243.939 |
| 16 | 73.904 | 16.987 | 24.31 | 194.374 |
| 17 | 25.64 | 41.599 | 60.991 | 181.346 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.355 | -0.485 | -0.297 | 0.195 |
| 02 | -0.496 | -0.789 | -0.705 | 0.893 |
| 03 | -1.908 | -1.837 | -2.005 | 1.269 |
| 04 | -0.867 | -2.338 | 1.22 | -2.338 |
| 05 | -4.007 | -3.489 | -2.897 | 1.36 |
| 06 | -4.007 | -4.007 | -0.074 | 1.11 |
| 07 | -3.466 | -4.007 | -0.963 | 1.272 |
| 08 | 1.0 | -0.411 | -0.812 | -1.747 |
| 09 | -1.752 | 0.34 | -2.134 | 0.834 |
| 10 | 0.209 | -0.931 | 0.154 | 0.189 |
| 11 | -0.263 | -1.215 | -0.726 | 0.896 |
| 12 | 0.377 | -1.42 | -0.33 | 0.459 |
| 13 | -1.347 | -1.453 | -2.336 | 1.227 |
| 14 | 0.224 | -1.749 | 0.231 | 0.274 |
| 15 | -1.557 | -1.166 | -1.009 | 1.136 |
| 16 | -0.045 | -1.454 | -1.119 | 0.91 |
| 17 | -1.069 | -0.605 | -0.233 | 0.841 |