Transcription factor | Foxc2 | ||||||||
Model | FOXC2_MOUSE.H10MO.D | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Origin | HOCOMOCO v9 | ||||||||
Model length | 15 | ||||||||
Quality | D | ||||||||
Consensus | KhTTGTTdTGYCAGd | ||||||||
wAUC | |||||||||
Best AUC | |||||||||
Benchmark datasets | |||||||||
Aligned words | 5 | ||||||||
TF family | Forkhead box (FOX) factors{3.3.1} | ||||||||
TF subfamily | FOXC{3.3.1.3} | ||||||||
MGI | 1347481 | ||||||||
EntrezGene | 14234 | ||||||||
UniProt ID | FOXC2_MOUSE | ||||||||
UniProt AC | Q61850 | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
|
A | C | G | T | |
---|---|---|---|---|
01 | 0.268 | 0.268 | 3.125 | 1.339 |
02 | 1.071 | 1.071 | 0.0 | 2.857 |
03 | 0.0 | 1.071 | 0.0 | 3.929 |
04 | 0.0 | 0.0 | 0.0 | 5.0 |
05 | 1.071 | 0.0 | 3.929 | 0.0 |
06 | 0.0 | 0.0 | 0.0 | 5.0 |
07 | 0.0 | 0.0 | 0.0 | 5.0 |
08 | 1.071 | 0.0 | 1.071 | 2.857 |
09 | 1.786 | 0.0 | 0.0 | 3.214 |
10 | 0.0 | 1.786 | 3.214 | 0.0 |
11 | 1.071 | 2.143 | 0.0 | 1.786 |
12 | 0.0 | 3.214 | 0.0 | 1.786 |
13 | 5.0 | 0.0 | 0.0 | 0.0 |
14 | 0.0 | 0.714 | 4.286 | 0.0 |
15 | 2.411 | 0.268 | 1.339 | 0.982 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.902 | -0.902 | 0.758 | 0.053 |
02 | -0.114 | -0.114 | -1.413 | 0.679 |
03 | -1.413 | -0.114 | -1.413 | 0.964 |
04 | -1.413 | -1.413 | -1.413 | 1.185 |
05 | -0.114 | -1.413 | 0.964 | -1.413 |
06 | -1.413 | -1.413 | -1.413 | 1.185 |
07 | -1.413 | -1.413 | -1.413 | 1.185 |
08 | -0.114 | -1.413 | -0.114 | 0.679 |
09 | 0.281 | -1.413 | -1.413 | 0.783 |
10 | -1.413 | 0.281 | 0.783 | -1.413 |
11 | -0.114 | 0.432 | -1.413 | 0.281 |
12 | -1.413 | 0.783 | -1.413 | 0.281 |
13 | 1.185 | -1.413 | -1.413 | -1.413 |
14 | -1.413 | -0.392 | 1.043 | -1.413 |
15 | 0.532 | -0.902 | 0.053 | -0.177 |