Model info
| Transcription factor | Foxc1 | ||||||||
| Model | FOXC1_MOUSE.H10MO.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Origin | HOCOMOCO v9 | ||||||||
| Model length | 15 | ||||||||
| Quality | C | ||||||||
| Consensus | bnhTGTTTACWTAvS | ||||||||
| wAUC | |||||||||
| Best AUC | |||||||||
| Benchmark datasets | |||||||||
| Aligned words | 26 | ||||||||
| TF family | Forkhead box (FOX) factors{3.3.1} | ||||||||
| TF subfamily | FOXC{3.3.1.3} | ||||||||
| MGI | 1347466 | ||||||||
| EntrezGene | 17300 | ||||||||
| UniProt ID | FOXC1_MOUSE | ||||||||
| UniProt AC | Q61572 | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
|
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 3.5 | 12.5 | 4.5 | 5.5 |
| 02 | 9.0 | 2.0 | 9.0 | 6.0 |
| 03 | 7.0 | 4.0 | 2.0 | 13.0 |
| 04 | 0.0 | 0.0 | 0.0 | 26.0 |
| 05 | 0.0 | 0.0 | 26.0 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 25.0 |
| 07 | 1.0 | 0.0 | 0.0 | 25.0 |
| 08 | 0.0 | 0.0 | 1.0 | 25.0 |
| 09 | 25.0 | 0.0 | 0.0 | 1.0 |
| 10 | 0.0 | 19.0 | 0.0 | 7.0 |
| 11 | 6.0 | 3.0 | 0.0 | 17.0 |
| 12 | 0.0 | 5.0 | 0.0 | 21.0 |
| 13 | 17.0 | 0.0 | 0.0 | 9.0 |
| 14 | 12.0 | 5.0 | 7.0 | 2.0 |
| 15 | 1.0 | 7.0 | 15.0 | 3.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.528 | 0.599 | -0.319 | -0.147 |
| 02 | 0.294 | -0.955 | 0.294 | -0.071 |
| 03 | 0.066 | -0.418 | -0.955 | 0.636 |
| 04 | -2.195 | -2.195 | -2.195 | 1.299 |
| 05 | -2.195 | -2.195 | 1.299 | -2.195 |
| 06 | -1.394 | -2.195 | -2.195 | 1.261 |
| 07 | -1.394 | -2.195 | -2.195 | 1.261 |
| 08 | -2.195 | -2.195 | -1.394 | 1.261 |
| 09 | 1.261 | -2.195 | -2.195 | -1.394 |
| 10 | -2.195 | 0.997 | -2.195 | 0.066 |
| 11 | -0.071 | -0.651 | -2.195 | 0.89 |
| 12 | -2.195 | -0.23 | -2.195 | 1.093 |
| 13 | 0.89 | -2.195 | -2.195 | 0.294 |
| 14 | 0.561 | -0.23 | 0.066 | -0.955 |
| 15 | -1.394 | 0.066 | 0.771 | -0.651 |